DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ssp6 and PDZD2

DIOPT Version :9

Sequence 1:NP_001286952.1 Gene:ssp6 / 38694 FlyBaseID:FBgn0035676 Length:866 Species:Drosophila melanogaster
Sequence 2:XP_005248326.1 Gene:PDZD2 / 23037 HGNCID:18486 Length:2873 Species:Homo sapiens


Alignment Length:1165 Identity:210/1165 - (18%)
Similarity:322/1165 - (27%) Gaps:464/1165 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 PMSTSCQS---IATAASSAATTAAAVSISASNATSVGSL-------------------------- 40
            |..|.|.:   ::.:||....|:...|...|:..|..||                          
Human   676 PSLTPCSTPTHMSRSASPNFNTSGGASAGGSDEGSSSSLGRKTPGPKDRIVMEVTLNKEPRVGLG 740

  Fly    41 IAAACQQEQPHPHQHYSQSQQQHLYHQSHQQASHYVNGTGSLGRLKFHKS-----LDASDEEIEY 100
            |.|.|...:..|...|..|.                 ..||:.:::.:.|     |:.:...:.:
Human   741 IGACCLALENSPPGIYIHSL-----------------APGSVAKMESNLSRGDQILEVNSVNVRH 788

  Fly   101 AQLSRSTH-------------ILGRHKSERYLASNPDEDRRRRTIIVEKKNNS---YGFTLQSYG 149
            |.||: .|             ::|||.:.:......||...|.|....|:.||   .|..|:|..
Human   789 AALSK-VHAILSKCPPGPVRLVIGRHPNPKVSEQEMDEVIARSTYQESKEANSSPGLGTPLKSPS 852

  Fly   150 IHYKRD---EELEMITYVDYVEYGGPAYRAGMREGDVILSINGKDMEKADHKTIVEFIKQCDTRM 211
            : .|:|   .|.|:..|..: :..||.       .|.:::    ..|..||..     ..|.|  
Human   853 L-AKKDSLISESELSQYFAH-DVPGPL-------SDFMVA----GSEDEDHPG-----SGCST-- 897

  Fly   212 RMVVLFEDCVRKVDLHMRYIQLQSMLQQKMNELERVHLRERELLEGKWKTHSLPARKKANA---- 272
                                                  .|...|.....||..|.:.:||:    
Human   898 --------------------------------------SEEGSLPPSTSTHKEPGKPRANSLVTL 924

  Fly   273 NTSPSDGEGVSPTEVAGEAGFYRPALSTEDVPNIAARQHGVGG---------------------P 316
            .:..:.|.......||.:|..  |. |.:.:.|...||..||.                     |
Human   925 GSHRASGLFHKQVTVARQASL--PG-SPQALRNPLLRQRKVGCYDANDASDEEEFDREGDCISLP 986

  Fly   317 GIIPPPAQFM---------------LTYHYLDPTYRYVL------RPTHGSSEEFVDGLGLQRSS 360
            |.:|.|.:.:               :..|..:...|..|      .|..|||   ||   |:.|.
Human   987 GALPGPIRPLSEDDPRRVSISSSKGMDVHNQEERPRKTLVSKAISAPLLGSS---VD---LEESI 1045

  Fly   361 SDHQPPAQRYVLQQTESVDA--------------------------NSMTQ-PTTT----APTQY 394
            .:....|..|....|:|.:|                          .:.|| ||.|    :|.|.
Human  1046 PEGMVDAASYAANLTDSAEAPKGSPGSWWKKELSGSSSAPKLEYTVRTDTQSPTNTGSPSSPQQK 1110

  Fly   395 HSTTGGSVKPPAPPPRTCEKHKPPAKPP---------------------------------KP-- 424
            ....|...:|.|.....|::.:..|||.                                 :|  
Human  1111 SEGLGSRHRPVARVSPHCKRSEAEAKPSGSQTVNLTGRANDPCDLDSRVQATSVKVTVAGFQPGG 1175

  Fly   425 --EKEK----SSGKHCHVGHSCN--PCLGHFRW--------KSAEK------------------- 454
              |||.    ::|..| |..||.  ..|.|...        |:|.:                   
Human  1176 AVEKESLGKLTTGDAC-VSTSCELASALSHLDASHLTENLPKAASELGQQPMTELDSSSDLISSP 1239

  Fly   455 ----SAVPAPDNVSLDAYDLASPCCDTHCVPSRRRHRQHKEHT-----HKHKHRDRERVE----- 505
                :|.|.|...|:|...::.|  :....|:..|..:.|..:     |:......|:..     
Human  1240 GKKGAAHPDPSKTSVDTGQVSRP--ENPSQPASPRVTKCKARSPVRLPHEGSPSPGEKAAAPPDY 1302

  Fly   506 SKEQRVRPKSTSH----------ASPNANGGAGSGHHHHHHHHHHSHEQQQQQQQQQQQQQQQQQ 560
            ||.:.....||.|          |.|.|.|...:|                      ........
Human  1303 SKTRSASETSTPHNTRRVAALRGAGPGAEGMTPAG----------------------AVLPGDPL 1345

  Fly   561 QQQQQQPIQTVPHHH---------HYPHQMHNPCQVQ-SQSGSTRSRYFDLA--------SGLAS 607
            ..|:|:  |..|.:|         |.|.....|..:: :.|.|:|:....|:        .....
Human  1346 TSQEQR--QGAPGNHSKALEMTGIHAPESSQEPSLLEGADSVSSRAPQASLSMLPSTDNTKEACG 1408

  Fly   608 HCSLHSCTSSEFATGDTASYTTSISTDTLFWDPTSETAQSRQHSTKSRQSYEQQPQQQQPTHQGH 672
            |.|.|.|..     |...|..|.|  |:...:..:..|:|....|....|.|...|...|...| 
Human  1409 HVSGHCCPG-----GSRESPVTDI--DSFIKELDASAARSPSSQTGDSGSQEGSAQGHPPAGAG- 1465

  Fly   673 HHHHHHQGDYHQRYHVTTTQ-MQPQQIY-PNTIAYVQKPKSWDNLANKAGFNVGYGYLDTVAVKP 735
                  .|...:...|...| ..|::.: ....||.|    |                   |.:|
Human  1466 ------GGSSCRAEPVPGGQTSSPRRAWAAGAPAYPQ----W-------------------ASQP 1501

  Fly   736 AIKMQIAQQRHSMPRRNPYGRY--------------------------STYGDVENYAPPPTEFV 774
            ::...|...:|....:|....|                          |.|||.|:.:..|.   
Human  1502 SVLDSINPDKHFTVNKNFLSNYSRNFSSFHEDSTSLSGLGDSTEPSLSSMYGDAEDSSSDPE--- 1563

  Fly   775 GELTTTTTTTI-----------------TAKSTEELLAACD---CLTPQQ-------QAAIKAA- 811
             .||.....:.                 .::|.||.:..|.   |..|..       ||||..| 
Human  1564 -SLTEAPRASARDGWSPPRSRVSLHKEDPSESEEEQIEICSTRGCPNPPSSPAHLPTQAAICPAS 1627

  Fly   812 ------QYQLSQNQKLS--HQNSCQLGYYSHLP---RPTTDVGTSTTSQQVHGAGDVQTT 860
                  :|...:....|  .:.:|..|.|:..|   :|::.:..|:...:.|  .|:.|:
Human  1628 AKVLSLKYSTPRESVASPREKAACLPGSYTSGPDSSQPSSLLEMSSQEHETH--ADISTS 1685

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ssp6NP_001286952.1 PDZ_signaling 130..216 CDD:238492 20/91 (22%)
PDZD2XP_005248326.1 PDZ_signaling 335..416 CDD:238492
PDZ_signaling 589..670 CDD:238492
PDZ_signaling 726..810 CDD:238492 14/101 (14%)
PDZ_signaling 2623..2694 CDD:238492
PDZ 2785..2867 CDD:214570
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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