DRSC/TRiP Functional Genomics Resources

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Protein Alignment ssp6 and Tamalin

DIOPT Version :9

Sequence 1:NP_001286952.1 Gene:ssp6 / 38694 FlyBaseID:FBgn0035676 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_620249.1 Gene:Tamalin / 192254 RGDID:70554 Length:394 Species:Rattus norvegicus


Alignment Length:343 Identity:80/343 - (23%)
Similarity:138/343 - (40%) Gaps:96/343 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 LDASDEEIEYAQLSRSTHILG----RHKSERYLASN--PDEDRRRRTIIVEK-KNNSYGFTLQSY 148
            |.|:.|:...|:|.|:..:.|    |.|...:...|  ...:::|:.:.:|| .|.::||.:|:|
  Rat    54 LYAALEDYHPAELYRALAVSGGTLPRRKGSGFRWKNFTQSPEQQRKVLTLEKGDNQTFGFEIQTY 118

  Fly   149 GIHYKRDEELEMITYVDYVEYGGPAYRAGMREGDVILSINGKDMEKADHKTIVEFIKQCDTRMRM 213
            |:|::.::.:||:|:|..|....||..||:..||.|.|:||.::|...|:.||:.||.....:|:
  Rat   119 GLHHREEQRVEMVTFVCRVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRL 183

  Fly   214 VVLFEDCVRKVDLHMRYIQLQSMLQQKMNELERVHLRERELLEGKWKTHSLPARKKANANTSPSD 278
            ..|:...:||.:|..|...|:..|.:|..|...:.::|:.|:.|.                    
  Rat   184 ETLYGTSIRKAELEARLQYLKQTLYEKWGEYRSLMVQEQRLVHGL-------------------- 228

  Fly   279 GEGVSPTEVAGEAGFYRPALSTEDVPNIAARQHGVG-GPGIIPPPAQFMLTYHYLDPTYRYVLRP 342
                    |..:...|      :.:.::.:..:|.| .||.:|               :..:|..
  Rat   229 --------VVKDPSIY------DTLESVRSCLYGAGLLPGSLP---------------FGPLLAA 264

  Fly   343 THGSSEEFVDGLGLQRSSSDHQPPAQRYVLQQTESVDANSMTQPTTTAPTQYHSTTGGSVKPPA- 406
            ..|:..      |.:|:..|                          |....||:...|..:|.| 
  Rat   265 PGGARG------GSRRAKGD--------------------------TDDAVYHTCFFGGAEPQAL 297

  Fly   407 PPPRTCEKHKPPAKPPKP 424
            |||      .|||:.|.|
  Rat   298 PPP------PPPARAPGP 309

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ssp6NP_001286952.1 PDZ_signaling 130..216 CDD:238492 31/86 (36%)
TamalinNP_620249.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..51
PDZ_signaling 99..184 CDD:238492 31/84 (37%)
Interaction with PSCD3. /evidence=ECO:0000250 180..257 19/110 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 293..318 10/23 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166340853
Domainoid 1 1.000 69 1.000 Domainoid score I9421
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003007
OrthoInspector 1 1.000 - - otm45672
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR15963
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
98.800

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