DRSC/TRiP Functional Genomics Resources

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Protein Alignment ssp6 and F28E10.4

DIOPT Version :9

Sequence 1:NP_001286952.1 Gene:ssp6 / 38694 FlyBaseID:FBgn0035676 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_500590.2 Gene:F28E10.4 / 185067 WormBaseID:WBGene00017902 Length:324 Species:Caenorhabditis elegans


Alignment Length:152 Identity:30/152 - (19%)
Similarity:59/152 - (38%) Gaps:21/152 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   181 GDVILSINGKDMEKADH--KTIVEFIKQCDTRMRMVVLFEDCVRKVDLHM-----------RYIQ 232
            ||.|:.::|..:...|:  ..|.|.:.:..|..::..|.|   |.:.:.|           .|..
 Worm   163 GDSIMDMSGAPIPMTDNPDNFIREHLSRLSTGAKVSFLVE---RPISVAMAKQYQKFIESITYDD 224

  Fly   233 LQSMLQQKMNELERVHLRERELLEGKWKTHSLPA-----RKKANANTSPSDGEGVSPTEVAGEAG 292
            .:..:.|.:.|:.|.......::..|..|.|:.:     |||:|..||.|....::.:..:.|..
 Worm   225 SEVEMAQDVIEIGREASNMHFMILKKLVTPSILSSDVRRRKKSNNKTSESTEGSITISSASTEMK 289

  Fly   293 FYRPALSTEDVPNIAARQHGVG 314
            ........:|:..:.::.|..|
 Worm   290 ITSDVTDFDDLKPVESKSHAAG 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ssp6NP_001286952.1 PDZ_signaling 130..216 CDD:238492 8/36 (22%)
F28E10.4NP_500590.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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