DRSC/TRiP Functional Genomics Resources

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Protein Alignment ssp6 and PATJ

DIOPT Version :9

Sequence 1:NP_001286952.1 Gene:ssp6 / 38694 FlyBaseID:FBgn0035676 Length:866 Species:Drosophila melanogaster
Sequence 2:XP_011538764.1 Gene:PATJ / 10207 HGNCID:28881 Length:1937 Species:Homo sapiens


Alignment Length:421 Identity:87/421 - (20%)
Similarity:133/421 - (31%) Gaps:132/421 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 ATTAAAVSISASNATSVGSLIAAACQQEQPHPHQHYSQSQQQHLYHQSHQQASHYVNGTGSLGRL 85
            |:.:.||....:....|..::.:.....:..|:.|...::.....:|..|:......||.. ..:
Human  1136 ASHSEAVEAIKNAGNPVVFIVQSLSSTPRVIPNVHNKANKITGNQNQDTQEKKEKRQGTAP-PPM 1199

  Fly    86 KF---HKSL-DASDEEIE------------YAQLSRSTHILGRHKSERYLASNPDEDRRRRTIIV 134
            |.   :|:| |.|||..|            ||.|....||                      |.:
Human  1200 KLPPPYKALTDDSDENEEEDAFTDQKIRQRYADLPGELHI----------------------IEL 1242

  Fly   135 EKKNNSYGFTLQSYGIHYKRDEELEMITYVDYVEYGGPAYRAG-MREGDVILSINGKDMEKADHK 198
            ||..|..|.:|..      ..:...|..:|..:...|||...| ||.||.:|.||.:.:....|:
Human  1243 EKDKNGLGLSLAG------NKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQ 1301

  Fly   199 TIVEFIKQCDTRMRMV-VLFEDCVRKVDLHMRYIQLQSMLQQKMNELERVHLRERELLEGKWKTH 262
            .....||...:::::| :..||.|.::.:                                 ...
Human  1302 NASAIIKTAPSKVKLVFIRNEDAVNQMAV---------------------------------TPF 1333

  Fly   263 SLPARKKANANTSPSDGEGVSPTEVAGEAGFYRPALSTEDVPNIAARQHGVGGPGI--IPPPAQF 325
            .:|       ::|||..|..|.||         |..|.||         |....||  :|....|
Human  1334 PVP-------SSSPSSIEDQSGTE---------PISSEED---------GSVEVGIKQLPESESF 1373

  Fly   326 MLTYHYLDPTYRYVLRPTHGSSEEFVDGLGLQRSSSDHQPP--AQRYVLQQTESVDANSMTQPTT 388
            .|                ...|:....|:...:..:...||  |...:.||......:..:|...
Human  1374 KL----------------EDMSQVIGQGMVADQQKALEYPPDNAVSQMKQQKYPTKVSFSSQEIP 1422

  Fly   389 TAP-TQYHSTT------GGSVKPPAPPPRTC 412
            .|| :.||||.      ||...|.:..|.||
Human  1423 LAPASSYHSTDADFTGYGGFQAPLSVDPATC 1453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ssp6NP_001286952.1 PDZ_signaling 130..216 CDD:238492 23/87 (26%)
PATJXP_011538764.1 L27_2 8..65 CDD:117611
PDZ_signaling 135..218 CDD:238492
PDZ_signaling 246..325 CDD:238492
PDZ_signaling 366..450 CDD:238492
PDZ_signaling 570..634 CDD:238492
PDZ 683..772 CDD:214570
PDZ_signaling 1066..1157 CDD:238492 4/20 (20%)
PDZ 1236..1321 CDD:214570 25/112 (22%)
PDZ 1459..1574 CDD:214570
PDZ_signaling 1586..1666 CDD:238492
PDZ_signaling 1729..1814 CDD:238492
PDZ_signaling 1852..1936 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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