DRSC/TRiP Functional Genomics Resources

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Protein Alignment ssp6 and USH1C

DIOPT Version :9

Sequence 1:NP_001286952.1 Gene:ssp6 / 38694 FlyBaseID:FBgn0035676 Length:866 Species:Drosophila melanogaster
Sequence 2:XP_016872564.1 Gene:USH1C / 10083 HGNCID:12597 Length:956 Species:Homo sapiens


Alignment Length:606 Identity:122/606 - (20%)
Similarity:186/606 - (30%) Gaps:223/606 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 SHYVNG--TGSLG--------RLKFHKSLDASDEE-IEYAQLSRSTHILGRHKSERYLASNPD-- 124
            ||.:.|  ..|:|        |:..:.....:.|| |...:..::..|..||.....:.|:||  
Human   115 SHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRTKKTVSIKVRHIGLIPVKSSPDEP 179

  Fly   125 --------------------------EDRRRRTIIVEKKNNSYGFT-----LQSYGIHYKRDEEL 158
                                      |::.::..|....:...|.:     :|..||        
Human   180 LTWQYVDQFVSESGGVRGSLGSPGNRENKEKKVFISLVGSRGLGCSISSGPIQKPGI-------- 236

  Fly   159 EMITYVDYVEYGGPAYRAGMREGDVILSINGKDMEKADHKTIVEFIKQCDTRMRMVV------LF 217
                ::.:|:.|..:...|:..||.|:.:||.|....|||..|..:|...:....:|      ||
Human   237 ----FISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAGRELF 297

  Fly   218 -EDCVRKVDLHMRYIQLQSMLQQKMNELE-RVHLRERELLEGKWKTHSLPARKKANANTSPSDGE 280
             .|..|..:...|.:|.|.:|.||...:| ...|:|::.:|.:        |:|..|..:..:.|
Human   298 MTDRERLAEARQRELQRQELLMQKRLAMESNKILQEQQEMERQ--------RRKEIAQKAAEENE 354

  Fly   281 GVSPTEVAGEAGFYRPALS-------------TED--------VP-NIAARQHGVGGPGIIPPPA 323
            .            ||..:.             .||        :| .|.|..|    |..:..|.
Human   355 R------------YRKEMEQIVEEEEKFKKQWEEDWGSKEQLLLPKTITAEVH----PVPLRKPK 403

  Fly   324 QFMLTYHYLD---PTYRY----VLRPTHGSSE---------EFVDGL------------------ 354
            .|...|.| |   ||.|.    ..:..:||.:         ||...|                  
Human   404 SFGWFYRY-DGKFPTIRKKGKDKKKAKYGSLQDLRKNKKELEFEQKLYKEKEEMLEKEKQLKINR 467

  Fly   355 ------GLQRSSSDHQPPAQRYV-------LQQTESVDANSMTQPTTTAPTQYHSTTGGSVKPPA 406
                  ..:|...:.....|.:|       |:|..|.| |.:::.||..|     ....||.|.|
Human   468 LAQEVSETEREDLEESEKIQYWVERLCQTRLEQISSAD-NEISEMTTGPP-----PPPPSVSPLA 526

  Fly   407 P--------------------------PPRT-----CEKHKPPAKP----PKPEKEKSSGKHCHV 436
            |                          ||:|     ...|.||:.|    |.|.....||   ||
Human   527 PPLRRFAGGLHLHTTDLDDIPLDMFYYPPKTPSALPVMPHPPPSNPPHKVPAPPVLPLSG---HV 588

  Fly   437 GHSCNPCLGHFRWKSAEKSAVPAPDNVSLDAYDLASPCCDTHCVPSRRRHRQHKEHTHKHKHRDR 501
            ..|.:|      |.......:|.|...|:...||         .|:|......:|....|..|..
Human   589 SASSSP------WVQRTPPPIPIPPPPSVPTQDL---------TPTRPLPSALEEALSNHPFRTG 638

  Fly   502 ------ERVESKEQRVRPKST 516
                  |..|:|....:|.::
Human   639 DTGNPVEDWEAKNHSGKPTNS 659

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ssp6NP_001286952.1 PDZ_signaling 130..216 CDD:238492 20/96 (21%)
USH1CXP_016872564.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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