DRSC/TRiP Functional Genomics Resources

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Protein Alignment dscamb and DIP-delta

DIOPT Version :9

Sequence 1:XP_009289749.1 Gene:dscamb / 386937 ZFINID:ZDB-GENE-031118-67 Length:2020 Species:Danio rerio
Sequence 2:NP_001097508.2 Gene:DIP-delta / 5740816 FlyBaseID:FBgn0085420 Length:469 Species:Drosophila melanogaster


Alignment Length:469 Identity:105/469 - (22%)
Similarity:173/469 - (36%) Gaps:69/469 - (14%)


- Green bases have known domain annotations that are detailed below.


Zfish   589 HVTVKVPPLIQHSDSQSASIGQRVFIPCVV----------ISGDLPMSITWHKDGRPINASLGVT 643
            ||.:..|...|...:.:.::|:...:||||          |..|..|.:|.|:  ..|:.....:
  Fly    38 HVMMDEPRFAQPIPNVTVAVGRDANLPCVVEHLGGYKVAWIHIDRQMILTIHR--HVISRIPRYS 100

Zfish   644 IDNIDFTSSLRISNLSEIHNGSYTCIARNEAAAVEHSIQLIVKVPPH---FEVQPKDQDGIYGKS 705
            |...|.|..|.::...:...|.|.|.. |....:.....|.|.|||:   .|..|........::
  Fly   101 ITYTDNTWLLHVNQAHQDDRGYYMCQV-NTNPMISQVGYLQVVVPPNILDIESTPSSVAVRENQN 164

Zfish   706 VTLNCSAKGNPIPTIVWNHSKGAGVPQFQPIALNSGSRVQLLENGSLLIKHVLEEDAGFYLCKVS 770
            :.:.|.|.|.|.|.|:|....|      :.||:....:|.:.:...|.:..|...:.|.|||..:
  Fly   165 INMTCRADGFPAPKIIWRREDG------EEIAVEKKKKVLVYDADVLPLTKVSRNEMGAYLCIAT 223

Zfish   771 NDVGADISKSMYLTVKIPAMITSYPNTTRAEQGHMTEMSCTAHGEKPIKVRWEKESHIINPDMSR 835
            |.|...:||.:.|.|:...||........|..|....:.|.........:.|...|.::.|. .:
  Fly   224 NGVPPSVSKRIILDVEFSPMIWVPNQLVGAPSGTDVTIDCHTEAHPKAIIYWVYNSVMVLPS-KK 287

Zfish   836 YVVTVKEVGDEVISTLQILHTVREDSGFFSCIAINSYGEDKGIIQLIVQDRPDPPEVEIREVKDR 900
            |.....|........|.|.:....|.|.:.||:.||.||.:|.|::.....|..|.   ::|...
  Fly   288 YKTDYTENSYRAHMKLTIRNLQYGDFGNYRCISKNSLGETEGSIRVYEIPLPSTPS---KQVTHT 349

Zfish   901 TIALRWTMGFDGNSPITGYDINYKNKSASWASSQMTKDVSPQLNQATIIELHPASTYNIRMFAKN 965
            |:..|                  :|.....:.:..||.:...:..|...:|:|.|.     .:.:
  Fly   350 TVESR------------------ENNIIPSSRNDTTKSLQTDVGYAMKNDLYPGSA-----SSSS 391

Zfish   966 QIGESRPSNELTITTDEAPPDGAPQDVQLEAISSQGIK----------VTWKPPHKHLQN---GL 1017
            ..|.|..::..:.....|.|.|    |...::||.|.|          .|.:||:::..:   ||
  Fly   392 SGGSSSAASSSSSMQTSALPGG----VAGNSLSSMGSKGSLAIGKSTFYTERPPNEYAASSVAGL 452

Zfish  1018 IRSYQVCYREFGTG 1031
            :....:.   ||:|
  Fly   453 LLHRALL---FGSG 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dscambXP_009289749.1 I-set 132..198 CDD:254352
I-set 225..310 CDD:254352
IGc2 239..300 CDD:197706
IG_like 320..400 CDD:214653
IGc2 328..391 CDD:197706
IG_like 417..501 CDD:214653
Ig 424..498 CDD:143165
IG_like 511..592 CDD:214653 2/2 (100%)
IGc2 518..576 CDD:197706
I-set 595..685 CDD:254352 22/99 (22%)
Ig 612..682 CDD:143165 18/79 (23%)
I-set 689..785 CDD:254352 25/98 (26%)
Ig7_DSCAM 706..785 CDD:143211 22/78 (28%)
IG_like 795..883 CDD:214653 20/87 (23%)
Ig 803..890 CDD:299845 20/86 (23%)
FN3 887..980 CDD:238020 14/92 (15%)
FN3 987..1084 CDD:238020 14/58 (24%)
FN3 1092..1185 CDD:238020
FN3 1190..1279 CDD:238020
IGc2 1302..1367 CDD:197706
FN3 1398..1471 CDD:238020
FN3 1485..1557 CDD:238020
DIP-deltaNP_001097508.2 IG 51..143 CDD:214652 21/94 (22%)
Ig 145..238 CDD:416386 25/98 (26%)
Ig strand A 145..149 CDD:409353 1/3 (33%)
Ig strand A' 154..159 CDD:409353 1/4 (25%)
Ig strand B 165..172 CDD:409353 1/6 (17%)
Ig strand C 178..183 CDD:409353 2/4 (50%)
Ig strand C' 185..187 CDD:409353 1/7 (14%)
Ig strand D 195..199 CDD:409353 1/3 (33%)
Ig strand E 203..209 CDD:409353 1/5 (20%)
Ig strand F 216..223 CDD:409353 4/6 (67%)
Ig strand G 230..238 CDD:409353 3/7 (43%)
Ig 242..333 CDD:416386 22/91 (24%)
Ig strand A' 250..253 CDD:409353 0/2 (0%)
Ig strand B 259..266 CDD:409353 1/6 (17%)
Ig strand C 272..277 CDD:409353 1/4 (25%)
Ig strand C' 281..283 CDD:409353 0/1 (0%)
Ig strand D 289..293 CDD:409353 0/3 (0%)
Ig strand E 295..305 CDD:409353 1/9 (11%)
Ig strand F 314..322 CDD:409353 3/7 (43%)
Ig strand G 325..334 CDD:409353 4/8 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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