DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6610 and SNRPB

DIOPT Version :9

Sequence 1:NP_001261461.1 Gene:CG6610 / 38693 FlyBaseID:FBgn0035675 Length:91 Species:Drosophila melanogaster
Sequence 2:NP_937859.1 Gene:SNRPB / 6628 HGNCID:11153 Length:240 Species:Homo sapiens


Alignment Length:72 Identity:22/72 - (30%)
Similarity:37/72 - (51%) Gaps:8/72 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 IGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDDVTEY-----ENTPDGRRITK--LDQILLNGNN- 79
            |..|:..|:::.:..:||...||..:|::|.|..|:     :|:....|..|  |..:||.|.| 
Human    13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 77

  Fly    80 ITMLVPG 86
            ::|.|.|
Human    78 VSMTVEG 84

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6610NP_001261461.1 LSm5 12..87 CDD:212479 22/72 (31%)
SNRPBNP_937859.1 Sm_B 5..83 CDD:212464 20/69 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 163..240
Repeat-rich region 175..236
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1958
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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