DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6610 and snrpd3

DIOPT Version :9

Sequence 1:NP_001261461.1 Gene:CG6610 / 38693 FlyBaseID:FBgn0035675 Length:91 Species:Drosophila melanogaster
Sequence 2:NP_001002081.1 Gene:snrpd3 / 415171 ZFINID:ZDB-GENE-040625-55 Length:127 Species:Danio rerio


Alignment Length:75 Identity:21/75 - (28%)
Similarity:41/75 - (54%) Gaps:11/75 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 MPLELVDKCIGSRIHIIM--KNDKEMV-GTLLGFDDFVNMLLDDVT-EYENTPDGRRITKLDQIL 74
            :|::::.:..|   ||:.  .|..|:. |.|:..:|.||..:.::| .|.   || |:.:|:|:.
Zfish     5 VPIKVLHEAEG---HIVTCETNTGEVYRGKLIEAEDNVNCQMANITVTYR---DG-RVAQLEQVY 62

  Fly    75 LNGNNITMLV 84
            :.|:.|..|:
Zfish    63 IRGSKIRFLI 72

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6610NP_001261461.1 LSm5 12..87 CDD:212479 21/75 (28%)
snrpd3NP_001002081.1 Sm_D3 6..75 CDD:212468 21/74 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1958
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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