DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6610 and snrpe

DIOPT Version :9

Sequence 1:NP_001261461.1 Gene:CG6610 / 38693 FlyBaseID:FBgn0035675 Length:91 Species:Drosophila melanogaster
Sequence 2:NP_957298.1 Gene:snrpe / 393979 ZFINID:ZDB-GENE-040426-1112 Length:92 Species:Danio rerio


Alignment Length:75 Identity:22/75 - (29%)
Similarity:44/75 - (58%) Gaps:6/75 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 LMPLELVDKCIGSRIHIIM----KNDKEMVGTLLGFDDFVNMLLDDVTEYENTPDGRRITKLDQI 73
            :.|:.|:.:.:.:|..|.:    :.:..:.|.::|||:::|::|||..|.......|:  .|.:|
Zfish    15 VQPINLIFRYLQNRSRISVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKTKNRK--PLGRI 77

  Fly    74 LLNGNNITML 83
            :|.|:|||:|
Zfish    78 MLKGDNITLL 87

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6610NP_001261461.1 LSm5 12..87 CDD:212479 22/75 (29%)
snrpeNP_957298.1 Sm_E 11..89 CDD:212465 22/75 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1958
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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