DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6610 and LSM1

DIOPT Version :10

Sequence 1:NP_648022.1 Gene:CG6610 / 38693 FlyBaseID:FBgn0035675 Length:91 Species:Drosophila melanogaster
Sequence 2:NP_055277.1 Gene:LSM1 / 27257 HGNCID:20472 Length:133 Species:Homo sapiens


Alignment Length:82 Identity:20/82 - (24%)
Similarity:36/82 - (43%) Gaps:23/82 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LELVDKCIGSRIHIIMKND-KEMVGTLLGFDDFVNMLLDDVTE-------YENTPDGRRITKLDQ 72
            :|.:||     .|:::..| :.::|.|...|.|.|::|....|       |.:.|.|       .
Human    11 IEDIDK-----KHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRG-------I 63

  Fly    73 ILLNGNNITMLVPGGEL 89
            .::.|.|:.:|   ||:
Human    64 FVVRGENVVLL---GEI 77

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6610NP_648022.1 LSm5 12..87 CDD:212479 18/78 (23%)
LSM1NP_055277.1 LSm1 4..77 CDD:212475 19/80 (24%)
PRK10788 <64..131 CDD:182731 5/17 (29%)

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