DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG42269 and Sv2b

DIOPT Version :9

Sequence 1:NP_648019.2 Gene:CG42269 / 38689 FlyBaseID:FBgn0259164 Length:662 Species:Drosophila melanogaster
Sequence 2:NP_001103223.1 Gene:Sv2b / 64176 MGIID:1927338 Length:683 Species:Mus musculus


Alignment Length:622 Identity:128/622 - (20%)
Similarity:204/622 - (32%) Gaps:253/622 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   173 KCRHG---WSYNFT-------------EIPYATVATEQNWVCDDAALPTYAQSIFFLGAIVGGLL 221
            :|.||   |:..|.             .:.:|..:.|:: :|..::.......|.:||.:.|..:
Mouse   101 ECGHGRFQWTLFFVLGLALMADGVEIFVVSFALPSAEKD-MCLSSSKKGMLGLIVYLGMMAGAFI 164

  Fly   222 FGWVADRFGRIPAL-----IGTNMMGLLAGVGTAFVSNFWEFAIMRFFVGFAFDNCFTMMYILVL 281
            .|.:||:.||...|     |..:...|     ::||..:..|...|...|........:::....
Mouse   165 LGGLADKLGRKKVLSMSLAINASFASL-----SSFVQGYGAFLFCRLISGIGIGGSLPIVFAYFS 224

  Fly   282 EYVGPKYRTFVANMS-IAIFF-TGA--ACLLPW-------------IAYFLADWKLLAIVTSAPL 329
            |::..:.|.  .::| :.||: ||.  |..:.|             ..|....|::..||.:.|.
Mouse   225 EFLSREKRG--EHLSWLGIFWMTGGIYASAMAWSIIPHYGWGFSMGTNYHFHSWRVFVIVCALPA 287

  Fly   330 LLAIFTPFVVPESARWLVSQGKVDKAVGILKKLEKGNGR-QVPPQTYQIFTDS----CKRMQE-- 387
            .:::.....:|||.|:|:..||.|:|..|||::...|.| :..|:  ::||.|    .|:|.|  
Mouse   288 TVSMVALKFMPESPRFLLEMGKHDEAWMILKQVHDTNMRAKGTPE--KVFTVSHIKTPKQMDEFI 350

  Fly   388 ----------------------QEAQNGKYSVLDLFKSPRLRRTTLLLIVIWMAISLVFDG---- 426
                                  |...|..|.|:..:     |..||:|.|:|..::|.:.|    
Mouse   351 EIQSSTGTWYQRWLVRFMTIFKQVWDNALYCVMGPY-----RMNTLILAVVWFTMALSYYGLTVW 410

  Fly   427 -----------------------HVRNV-------------GSLGLDIFF-----------TFTL 444
                                   ||...             |.|..|.|.           ||..
Mouse   411 FPDMIRYFQDEEYKSKMKVFFGEHVHGATINFTMENQIHQHGKLVNDKFIKMYFKHVLFEDTFFD 475

  Fly   445 ACFTE------------------------------------------------------------ 449
            .|:.|                                                            
Mouse   476 KCYFEDVTSTDTYFKNCTIESTTFYNTDLYKHKFINCRFINSTFLEQKEGCHMDFEEDNDFLIYL 540

  Fly   450 ---------LPADTLLTVILDRFGRRWLACSSMVLSGV--FSLLATVVPVGIYSAALAIMGRFFV 503
                     ||.:.:..:::||.||..:...||::|.|  |.|                   ||.
Mouse   541 VSFLGSLSVLPGNIISALLMDRIGRLKMIGGSMLISAVCCFFL-------------------FFG 586

  Fly   504 NI-SYNIGLQ----------WAA------EVLPTVVRAQAVAFIH-------IMGYVASIIAPFV 544
            |. |..||.|          |.|      |:.||..||.|...::       |:|  .:|.|.||
Mouse   587 NSESAMIGWQCLFCGTSIAAWNALDVITVELYPTNQRATAFGILNGLCKFGAILG--NTIFASFV 649

  Fly   545 VYLANISQALPLIILGILGIIGGLLALLLPETLNHVL 581
                .|::.:|:::.....:.|||:||.||||...||
Mouse   650 ----GITKVVPILLAAASLVGGGLIALRLPETREQVL 682

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42269NP_648019.2 2A0119 80..552 CDD:273328 116/591 (20%)
MFS 206..545 CDD:119392 106/535 (20%)
Sv2bNP_001103223.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..73
synapt_SV2 8..683 CDD:130366 128/622 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.