DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6592 and scaf

DIOPT Version :10

Sequence 1:NP_648016.1 Gene:CG6592 / 38687 FlyBaseID:FBgn0035669 Length:438 Species:Drosophila melanogaster
Sequence 2:NP_610180.1 Gene:scaf / 35505 FlyBaseID:FBgn0033033 Length:655 Species:Drosophila melanogaster


Alignment Length:256 Identity:63/256 - (24%)
Similarity:106/256 - (41%) Gaps:47/256 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   114 PEGAMAMDRIFGGDVGNPHCFPYQVGMLLQRPKGLYWCGGSLISDKHVITAAHCV------DMAK 172
            |.|...:|..|..       .|:|..:|.:..|.|. |||::|.|:.|:::|.||      |:..
  Fly   421 PTGVKDLDANFAE-------IPWQAMILRESSKTLI-CGGAIIGDQFVLSSASCVNGLPVTDIRV 477

  Fly   173 RALVFLGANEIKNAKEKGQVRLMVPSENFQIYPTWNPKRLKDDIAIVRLPHAVSFNERIHPIQL- 236
            :|    |..|:.:..|....:| ...:...::|.::|.....|:||:||...:.|...|.||.: 
  Fly   478 KA----GEWELGSTNEPLPFQL-TGVKTVDVHPDYDPSTNSHDLAIIRLERRLEFASHIQPICIS 537

  Fly   237 ---PKRHYEYRSFKNKLAIASGWGRYATGVHAISNVLRYVQLQIIDGRT-CKSNFPLSYRGTNIC 297
               ||        .::....||||:.|..:|. ...|.:|...:...|: |.::      .:::|
  Fly   538 DEDPK--------DSEQCFTSGWGKQALSIHE-EGALMHVTDTLPQARSECSAD------SSSVC 587

  Fly   298 TSGRNARSTCNGDSGGPLVLQRRHSKKRVLVGITSFGSIYGCDRGYPAAFTKVASYLDWIS 358
            ::.:  ..:|..|.|..|......|.:  |.||  |.....|..|....|.|  ..:.||:
  Fly   588 SATK--FDSCQFDVGSALACGSGSSVR--LKGI--FAGENSCGEGQTVRFAK--PDIKWIN 640

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6592NP_648016.1 Tryp_SPc 123..359 CDD:238113 60/247 (24%)
scafNP_610180.1 Atrophin-1 <63..>338 CDD:460830
CLIP_SPH_Scar 343..408 CDD:465747
Tryp_SPc 428..616 CDD:238113 52/219 (24%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.