DRSC/TRiP Functional Genomics Resources

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Protein Alignment alphaKap4 and Kpna2

DIOPT Version :9

Sequence 1:NP_648007.1 Gene:alphaKap4 / 38675 FlyBaseID:FBgn0035657 Length:442 Species:Drosophila melanogaster
Sequence 2:NP_034785.1 Gene:Kpna2 / 16647 MGIID:103561 Length:529 Species:Mus musculus


Alignment Length:486 Identity:134/486 - (27%)
Similarity:227/486 - (46%) Gaps:59/486 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 RKRRFLKKGQNLMMLRTLRLE------KAKKAE-------------------------------- 30
            |..||..||::...:|..|:|      ||||.|                                
Mouse    13 RLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWS 77

  Fly    31 ------------LQKELTIYNALTKCKLTSSEVVPDVNKLLKSNTIGNLVESLGHGNKNKIRADA 83
                        |:.:|....|..  ||.|.|..|.::.::::..|...|..||..:.:.|:.::
Mouse    78 VEDIVKGINSNNLESQLQATQAAR--KLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 140

  Fly    84 ADALAHIASGSSEHSNLIAKAGAVPRLIRLLQSPDPEVCEKGILSLGNLLHFAPNLRDYIIRHGL 148
            |.||.:||||:||.:..:...||:|..|.||.||...:.|:.:.:|||:.......||.:|:||.
Mouse   141 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 205

  Fly   149 MQKLMSIIQDKSTCTL---MLSHVTWVLRKLCISSQPSPPDNAAE-IIQALNIVLYNPEANVLED 209
            :..|::::......||   .|.::||.|..||.:..|:||.:|.| |:..|..:|::.:..||.|
Mouse   206 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLAD 270

  Fly   210 ALMAVRNLAHG-NETIQMLLDFEVVPRIIYLLEHPNVTVQNAALQALINIATGSEEQIQELLNNN 273
            :..|:..|..| ||.|:|::...|||:::.||....:.:...||:|:.||.||::||.|::::..
Mouse   271 SCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAG 335

  Fly   274 LLPHLSALMSNSDPDIRCQVLKLLLNIADGNIFQRHAIMNAGLLHKILECLKADAISLKSAAALT 338
            .|....:|::|...:|:.:....:.||..|...|...::|.||:..::..|.......:..||..
Mouse   336 ALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 400

  Fly   339 ITTLAIDKDKNLLCYLMRQGVIPEFCNLLFCQERDILSNVLDILSTMLDVDPSF--SAEVSGIIE 401
            ||..........:.||:..|:|....|||..::..|:..:||.:|.:.......  :.::|.:||
Mouse   401 ITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIE 465

  Fly   402 WSGALNNIRMLQSSEHEEIAAVARKIIGNYF 432
            ..|.|:.|..||..|:|.:...:..:|..||
Mouse   466 ECGGLDKIEALQRHENESVYKASLNLIEKYF 496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alphaKap4NP_648007.1 ARM 57..177 CDD:237987 38/122 (31%)
armadillo repeat 98..134 CDD:293788 12/35 (34%)
armadillo repeat 140..176 CDD:293788 12/38 (32%)
ARM 189..301 CDD:237987 34/113 (30%)
armadillo repeat 192..217 CDD:293788 6/24 (25%)
armadillo repeat 224..260 CDD:293788 12/35 (34%)
armadillo repeat 266..300 CDD:293788 5/33 (15%)
ARM 276..385 CDD:237987 26/108 (24%)
armadillo repeat 308..342 CDD:293788 8/33 (24%)
armadillo repeat 350..383 CDD:293788 10/32 (31%)
Arm_3 400..>433 CDD:292804 12/33 (36%)
Kpna2NP_034785.1 SRP1 9..528 CDD:227396 134/486 (28%)
IBB 10..98 CDD:280005 15/84 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 45..70 1/24 (4%)
Nuclear localization signal. /evidence=ECO:0000269|PubMed:10201409, ECO:0000269|PubMed:10764582 45..54 1/8 (13%)
ARM 1, truncated 71..111 7/41 (17%)
ARM 2 112..151 11/38 (29%)
ARM 113..238 CDD:237987 39/124 (31%)
armadillo repeat 115..147 CDD:293788 8/31 (26%)
NLS binding site (major) 142..238 33/95 (35%)
armadillo repeat 155..191 CDD:293788 12/35 (34%)
armadillo repeat 197..236 CDD:293788 12/38 (32%)
ARM 4 200..244 13/43 (30%)
ARM 5 246..282 10/35 (29%)
ARM 252..364 CDD:237987 34/111 (31%)
armadillo repeat 253..278 CDD:293788 6/24 (25%)
ARM 6 283..322 14/38 (37%)
armadillo repeat 288..320 CDD:293788 9/31 (29%)
NLS binding site (minor) 315..403 23/87 (26%)
armadillo repeat 328..364 CDD:293788 7/35 (20%)
ARM 329..449 CDD:237987 28/119 (24%)
ARM 8 367..409 9/41 (22%)
armadillo repeat 370..404 CDD:293788 8/33 (24%)
ARM 9 410..456 11/45 (24%)
armadillo repeat 413..447 CDD:293788 11/33 (33%)
ARM 10, atypical 457..496 11/38 (29%)
HEAT repeat 457..494 CDD:293787 11/36 (31%)
Arm_3 458..508 CDD:292804 13/39 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5064
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54553
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000157
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.820

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