Protein Alignment Rcc1 and PRAF1

DIOPT Version :9

• Sequence 1: NP_523943.1
• Gene: Rcc1 / 38669
• FlyBaseID: FBgn0002638
• Length: 547
• Species: Drosophila melanogaster
• Sequence 2: NP_565144.1
• Gene: PRAF1 / 844030
• AraportID: AT1G76950
• Length: 1103
• Species: Arabidopsis thaliana
• Alignment Length: 606
• Identity: 135/606 - (22%)
• Similarity: 228/606 - (37%)
• Gaps: 157/606 - (25%)

  Fly    41 LGNV-----LVCGNGDVGQLGLGE---------DILERKRLSPVAGIPDAVDISAGGMHNLVLTK 91
            ||:|     ::|.|  |.::|:.:         |:|..|.|.... :.|...|:.|..|...:|:
plant   237 LGDVYIWGEVICDN--VVKVGIDKNASYLTTRTDVLVPKPLESNI-VLDVHQIACGVRHAAFVTR 298

  Fly    92 SGDIYSFGCNDEGALGRDTSEDGSESKPDLID---LPGKALCISAGDSHSACLLEDGRVFAWGSF 153
            .|:|:::|....|.||....:|  ...|.|::   .......::.|:.|:..:...|.::.||
plant   299 QGEIFTWGEESGGRLGHGIGKD--VFHPRLVESLTATSSVDFVACGEFHTCAVTLAGELYTWG-- 359

  Fly   154 RDSHGNMGLTIDGN-------KRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLG 211
             |...|:||...|:       ||....| ||....|::.|..|..::|:.|::||.|....|.||
plant   360 -DGTHNVGLLGHGSDISHWIPKRIAGSL-EGLHVASVSCGPWHTALITSYGRLFTFGDGTFGVLG 422

  Fly   212 RLSERSI----SGEGRRGKRDL---------LRPTQLIITRAKPFEAIWATNYCTFMRESQTQVI 263
            ...:.::    ..|...|.|.:         ....::|:|::.....           .|.....
plant   423 HGDKETVQYPREVESLSGLRTIAVSCGVWHTAAVVEIIVTQSNSSSV-----------SSGKLFT 476

  Fly   264 WATGLNNFKQLAHETKGKEFALTPIKTELK-DIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGL 327
            |..|..|  :|.|..|......|.:...:. :...||.|...||.|||..:...:|...||:  |
plant   477 WGDGDKN--RLGHGDKDPRLKPTCVPALIDYNFHKIACGHSLTVGLTTSGQVFTMGSTVYGQ--L 537

  Fly   328 GDVKDVVEKPTIV--KKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIV 390
            |:::...:.|.:|  |..:|.:..:.||.....|:|...::|:||.|.|.:||.||.:|...|.:
plant   538 GNLQTDGKLPCLVEDKLASEFVEEISCGAYHVAALTSRNEVYTWGKGANGRLGHGDLEDRKVPTI 602

  Fly   391 VVSKNTQGKHMLLASGGGQH--AIFL---VKADKQDQ---------------------------- 422
            |  :..:.:|:...:.|..:  ||.|   |...:|.|
plant   603 V--EALKDRHVKYIACGSNYTAAICLHKWVSGAEQSQCSTCRLAFGFTRKRHNCYNCGLVHCHSC 665

  Fly   423 --------------------KENVPVKVSGSSSI---SKKDKTPPQDNVDKEAENVDKQEQKENL 464
                                .::..||:|..|.|   ::::...|:    ...||.|:.::.|..
plant   666 SSKKAFRAALAPSAGRLYRVCDSCYVKLSKVSEINDTNRRNSAVPR----LSGENRDRLDKSEIR 726

  Fly   465 PAKASTSSKKNKTPPQDNADKEAENVDKQEQKENLPAKASTSSKKIKT---------PPQDDAAE 520
            .||..||                 |:|..:|   |.:||:...||..|         |......:
plant   727 LAKFGTS-----------------NMDLIKQ---LDSKAAKQGKKTDTFSLGRNSQLPSLLQLKD 771

  Fly   521 EVEEE--SAQEPTPKKAKKPA 539
            .|:..  ..:..|||.|:.|:
plant   772 AVQSNIGDMRRATPKLAQAPS 792

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rcc1	NP_523943.1	RCC1	42..89	CDD:278826	14/60 (23%)
		RCC1	92..141	CDD:278826	11/51 (22%)
		RCC1_2	131..158	CDD:290274	6/26 (23%)
		RCC1	144..193	CDD:278826	16/55 (29%)
		RCC1_2	182..209	CDD:290274	8/26 (31%)
		RCC1	363..414	CDD:278826	16/52 (31%)
PRAF1	NP_565144.1	PH_PLC_plant-like	14..124	CDD:270171
		ATS1	238..628	CDD:227511	101/415 (24%)
		FYVE	627..695	CDD:214499	5/67 (7%)
		COG1340	<828..909	CDD:224259
		BRX_N	879..>908	CDD:404581
		BRX	1022..1077	CDD:400608

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5184
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1062377at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	4	3.820