DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rcc1 and RUG3

DIOPT Version :9

Sequence 1:NP_523943.1 Gene:Rcc1 / 38669 FlyBaseID:FBgn0002638 Length:547 Species:Drosophila melanogaster
Sequence 2:NP_974971.2 Gene:RUG3 / 836208 AraportID:AT5G60870 Length:452 Species:Arabidopsis thaliana


Alignment Length:423 Identity:115/423 - (27%)
Similarity:178/423 - (42%) Gaps:83/423 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 GNGDVGQLGLG-EDILERKRLSPVAGI-------------PDAVD---------ISAGGMHNLVL 89
            |.|..||||.| |:|  |...||||.:             |..:|         ||.|..|: .|
plant    54 GRGASGQLGGGIEEI--RMYPSPVANLLFRSDQSFSLAQTPGRIDADSSSFRIGISCGLFHS-GL 115

  Fly    90 TKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDL--PGKALCISAGDSHSACLLEDGRVFAWGS 152
            |..||::.:|..|.|.||  ..::.|...|:|..|  .....||:.|..||..|...|.||.|| 
plant   116 TIDGDLWIWGKGDGGRLG--FGQENSVFVPNLNPLFEEHSIRCIALGGLHSVALTHQGDVFTWG- 177

  Fly   153 FRDSHGNMGLTIDGNKRTPIDLMEGTVC--CSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSE 215
             ....|.:|..:...:..|..:.:...|  .:||:...|...:|.:|:::..| .|:|. |||. 
plant   178 -YGGFGALGHKVYTRELVPRRVDDSWDCKISAIATSGTHTAAITESGELYMWG-REEGD-GRLG- 238

  Fly   216 RSISGEGRRGKRD---LLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHE 277
               .|.| ||..:   |..|:: :.....|..::....:.|.....:.| :|..|.|:..:|...
plant   239 ---LGPG-RGPNEGGGLSVPSK-VKALTVPVASVSCGGFFTMALTKEGQ-LWNWGANSNYELGRG 297

  Fly   278 TKGKEFALTPIKTELKDIR--HIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIV 340
            .....:...|:.: |:.:|  .||.|.:|::.||.:.|....|...:|:||...::: .:.||.:
plant   298 DNLGGWEPMPVPS-LEGVRITQIACGGYHSLALTEEGKVLSWGHGGHGQLGSSSLRN-QKVPTEI 360

  Fly   341 KKLTE-KIVSVGCGEVCSYAV-------TIDGKLYSWGSGVNNQLGVG---------------DG 382
            :.|.: |||.:..|...|.|:       |..|:|:.||:..:.||||.               ..
plant   361 EALADKKIVFIASGGSSSAAITGWDWFLTDGGELWMWGNAKDFQLGVPGLPEIQTTPVEVNFLTE 425

  Fly   383 DDELEPIVVVSKNTQGKHMLLASGGGQHAIFLV 415
            :||.:|..|:|          .|.|..||:.||
plant   426 EDECQPHKVIS----------ISIGASHALCLV 448

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcc1NP_523943.1 RCC1 42..89 CDD:278826 20/63 (32%)
RCC1 92..141 CDD:278826 16/50 (32%)
RCC1_2 131..158 CDD:290274 10/26 (38%)
RCC1 144..193 CDD:278826 12/50 (24%)
RCC1_2 182..209 CDD:290274 7/26 (27%)
RCC1 363..414 CDD:278826 17/65 (26%)
RUG3NP_974971.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 127 1.000 Inparanoid score I1910
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.870

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