DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rcc1 and AT5G12350

DIOPT Version :9

Sequence 1:NP_523943.1 Gene:Rcc1 / 38669 FlyBaseID:FBgn0002638 Length:547 Species:Drosophila melanogaster
Sequence 2:NP_568268.3 Gene:AT5G12350 / 831110 AraportID:AT5G12350 Length:1075 Species:Arabidopsis thaliana


Alignment Length:636 Identity:156/636 - (24%)
Similarity:233/636 - (36%) Gaps:173/636 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 LGNVLVCGNG-DVGQLGLGE-----------DILERKRLSPVAGIPDAVDISAGGMHNLVLTKSG 93
            ||:|.:.|.| ..|.||.|.           |.|..|.|.... :.|..:|:.||.|.:::||.|
plant   264 LGDVFIWGEGIGEGVLGGGNRRVGSSFDIKMDSLLPKALESTI-VLDVQNIACGGQHAVLVTKQG 327

  Fly    94 DIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKAL------CISAGDSHSACLLEDGRVFAWGS 152
            :.:|:|...||.||...  |.:..:|.|||    ||      .::.|:.||..:...|.::.||.
plant   328 ESFSWGEESEGRLGHGV--DSNIQQPKLID----ALNTTNIELVACGEFHSCAVTLSGDLYTWGK 386

  Fly   153 FRDSHGNMGLTIDGN-------KRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQL 210
                 |:.|:...||       ||... |:||....|||.|..|..::|:||::||.|....|.|
plant   387 -----GDFGVLGHGNEVSHWVPKRVNF-LLEGIHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVL 445

  Fly   211 GRLSERSI-------SGEGRRGKRDLLRPTQLIITRAKPFEAIWAT-------------NYCTFM 255
            |...::|:       |.:|.|..|...              .:|.|             :.|:  
plant   446 GHGDKKSVFIPREVDSLKGLRTVRAAC--------------GVWHTAAVVEVMVGSSSSSNCS-- 494

  Fly   256 RESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELK-DIRHIAGGQHHTVILTTDLKCSVVGR 319
              |.....|..|  :..:|.|..|..:...|.:...:: :...:|.|...||.|||......:|.
plant   495 --SGKLFTWGDG--DKGRLGHGNKEPKLVPTCVAALVEPNFCQVACGHSLTVALTTSGHVYTMGS 555

  Fly   320 PEYGRLGL----GDVKDVVEKPTIVKKLTEKIV-SVGCGEVCSYAVTIDGKLYSWGSGVNNQLGV 379
            |.||:||.    |...:.||     .||.:..| .:.||......:|...::|:||.|.|.:||.
plant   556 PVYGQLGNSHADGKTPNRVE-----GKLHKSFVEEIACGAYHVAVLTSRTEVYTWGKGSNGRLGH 615

  Fly   380 GDGDDELEPIVVVS-KNTQ---------------------GKHMLLASGGGQHAIFLVK------ 416
            ||.||...|.:|.| |:.|                     |....:.||..|...|..|      
plant   616 GDVDDRNSPTLVESLKDKQVKSIACGTNFTAAVCIHRWASGMDQSMCSGCRQPFSFKRKRHNCYN 680

  Fly   417 ---------ADKQDQK------ENVPVKV----------------SGSSSISKKDK----TPPQD 446
                     ..|:..|      .|.|.:|                |..||:|::..    :.|.|
plant   681 CGLVFCHSCTSKKSLKACMAPNPNKPYRVCDKCFNKLKKTMETDPSSHSSLSRRGSINQGSDPID 745

  Fly   447 NVDKEAENVDKQEQKENL---PAKASTSSKKNK---------TP-PQDNADKEAENVDKQEQKEN 498
            ..||.....|.|..:.:|   ..:..:..||||         :| |..::.:.|.|:.|...   
plant   746 KDDKFDSRSDGQLARFSLMESMRQVDSRHKKNKKYEFNSSRVSPIPSGSSQRGALNIAKSFN--- 807

  Fly   499 LPAKASTSSKKI--KTPPQDDAAEEVEEESAQEPTPKKAKKPAAKRGGKKT 547
               ....:|||.  .:.|............::.|:|.::..|.....|..|
plant   808 ---PVFGASKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLSGLAT 855

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcc1NP_523943.1 RCC1 42..89 CDD:278826 17/58 (29%)
RCC1 92..141 CDD:278826 17/54 (31%)
RCC1_2 131..158 CDD:290274 6/26 (23%)
RCC1 144..193 CDD:278826 17/55 (31%)
RCC1_2 182..209 CDD:290274 11/26 (42%)
RCC1 363..414 CDD:278826 20/72 (28%)
AT5G12350NP_568268.3 PH_PLC_plant-like 19..129 CDD:270171
RCC1_2 310..339 CDD:290274 10/28 (36%)
RCC1 327..375 CDD:278826 17/53 (32%)
RCC1 378..428 CDD:278826 17/55 (31%)
RCC1 432..480 CDD:278826 14/61 (23%)
RCC1 496..544 CDD:278826 10/49 (20%)
RCC1 547..596 CDD:278826 14/53 (26%)
RCC1 601..648 CDD:278826 16/46 (35%)
FYVE 652..719 CDD:279674 11/66 (17%)
BRX_N 911..946 CDD:290432
BRX 1006..1060 CDD:285568
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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