DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rcc1 and rpgr

DIOPT Version :9

Sequence 1:NP_523943.1 Gene:Rcc1 / 38669 FlyBaseID:FBgn0002638 Length:547 Species:Drosophila melanogaster
Sequence 2:XP_031752069.1 Gene:rpgr / 733454 XenbaseID:XB-GENE-982274 Length:1225 Species:Xenopus tropicalis


Alignment Length:599 Identity:149/599 - (24%)
Similarity:221/599 - (36%) Gaps:178/599 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPRRKALTNNNNAGEAEQQPPK-----AKRARIAFHLELPKRRTVL----GNVLVCGNGDVGQLG 56
            :|...||.....:..||..|.|     .|.|||:...|    .|||    |.:.|.|:.:.||||
 Frog    10 VPDSGALFTFGKSKFAENIPSKFWLKNDKPARISCGDE----HTVLVTGNGKLYVFGSNNWGQLG 70

  Fly    57 LGEDILERKRLSPVAGIPDAVDISAGGMHN-LVLTKSGDIYSFGCNDEGALG-RDTSEDGSESKP 119
            :.......|.....|...:.|.::|.|.|: ||.|:.|.:||.|.|.||.|| .||:...|..:.
 Frog    71 VEAGSAISKPTCVKALKSEKVVLAACGRHHTLVYTEQGKLYSSGGNSEGQLGLGDTAGRTSFQEI 135

  Fly   120 DLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCS-- 182
            .......|...:|||.:.||.|..||::|.||.  :|.|.:||.            :||:.|:  
 Frog   136 SFFTAQYKIKQLSAGSNMSAALTVDGKLFMWGD--NSEGQLGLE------------KGTIYCTPQ 186

  Fly   183 ----------IASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLII 237
                      |:.|..|...:|..|:::|.|..|.|:||                   .|...|.
 Frog   187 KVDTGKPIAWISCGYYHSAFVTQDGELYTFGEPENGKLG-------------------LPPDKIK 232

  Fly   238 TRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQ 302
            ...||...:                    ||:          ||   :|.:.         .||:
 Frog   233 KHKKPQRVL--------------------GLS----------GK---VTMVS---------CGGE 255

  Fly   303 HHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLT-EKIVSVGCGEVCSYAVTIDGKL 366
            |  .|..|:.:....|..::|:||.|........|..|..|| :||..|.|||..:..:|..|.|
 Frog   256 H--TIAVTEKEVYTFGLGQFGQLGHGTFIFETHIPKAVDALTKKKIRYVTCGENHTAIITEKGLL 318

  Fly   367 YSWGSGVNNQLGVGDGD--DELEPIV--------VVSKNTQGKHMLLASGGGQHAIFLVKADKQD 421
            |::|.|.:.:||:|:.:  ::..||:        |.|....|.|||:.:                
 Frog   319 YTFGDGRHGKLGLGEENFTNQFVPILCSNFLKFTVQSVACGGCHMLVFA---------------- 367

  Fly   422 QKENVPVKVSGSSSISKKDKTP-PQDNVDKEAENVDKQEQKENL--------PAKASTSSKKNKT 477
                                || ||     |:|.:...|.||||        .::.|||.:::.:
 Frog   368 --------------------TPRPQ-----ESEVIINDELKENLLVVPSLNGDSEMSTSLQRSHS 407

  Fly   478 PPQDNADKEAENVDKQEQKENLP--------AKASTSSKKIKT---PPQDDAAEEVEEESAQEPT 531
            ......:||......:.....||        :....|||.:.|   ...:..:...:|...|:.|
 Frog   408 ARLRRREKETSPEQFRGLNRTLPPLRNHSLNSSFLASSKTVPTRLLQVSESNSGSYKETHLQDLT 472

  Fly   532 PKKAKKPAAKRGGK 545
            |.  .||.|...|:
 Frog   473 PN--SKPDAADNGE 484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcc1NP_523943.1 RCC1 42..89 CDD:278826 14/47 (30%)
RCC1 92..141 CDD:278826 18/49 (37%)
RCC1_2 131..158 CDD:290274 12/26 (46%)
RCC1 144..193 CDD:278826 15/60 (25%)
RCC1_2 182..209 CDD:290274 8/38 (21%)
RCC1 363..414 CDD:278826 16/60 (27%)
rpgrXP_031752069.1 ATS1 <42..334 CDD:227511 101/372 (27%)
RCC1 315..362 CDD:395335 13/46 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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