Protein Alignment Rcc1 and rpgra

DIOPT Version :9

• Sequence 1: NP_523943.1
• Gene: Rcc1 / 38669
• FlyBaseID: FBgn0002638
• Length: 547
• Species: Drosophila melanogaster
• Sequence 2: XP_021334464.1
• Gene: rpgra / 571327
• ZFINID: ZDB-GENE-070912-423
• Length: 1692
• Species: Danio rerio
• Alignment Length: 628
• Identity: 143/628 - (22%)
• Similarity: 223/628 - (35%)
• Gaps: 209/628 - (33%)

  Fly    39 TVLGNVLVCGNGDVGQLGLG----------EDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSG 93
            |..|.:.|.|:.:.|||||.          ..:|:.:|         |..::.|..|.||.|..|
Zfish    44 TEQGRLFVFGDNNRGQLGLQIKGPVTKPVCVKVLKGER---------AQSVACGTDHTLVSTSQG 99

  Fly    94 DIYSFGCNDEGALGRDTSEDG---SESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRD 155
            :|.:.|.|.:|.||.....|.   ...:|.....|.|.|  ||||..||.|.||||:|.||.  :
Zfish   100 EILAAGGNSDGQLGLGHCNDSISFQRLRPFCDYAPIKLL--SAGDHTSAALTEDGRLFLWGD--N 160

  Fly   156 SHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISG 220
            |.|.:|...|.:...|.:|..|.....::.|..|..::|.:|.|::.|.:..|:|| ||
Zfish   161 SAGQLGFGNDSHALLPKELNMGQSIHWVSCGYRHSALVTDSGDVYSFGESADGRLG-LS------ 218

  Fly   221 EGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFAL 285
                                                                  ||:.....:
Zfish   219 ------------------------------------------------------AHQLANHSY-- 227

  Fly   286 TPIKTE-LKDIRHIAGGQHHTVILTTD-LKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KI 347
             |.:.| |..:..:|.|..||:.||.| |.|  .|..|:|:||||.:..|.:.|..|....: ::
Zfish   228 -PQRVESLHSVLQVACGGKHTLALTEDELYC--FGGGEFGQLGLGTLVFVADSPVAVGHFRKGRV 289

  Fly   348 VSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGD--DELEPIVVVSKNTQGKHMLLASGGGQH 410
            ..|.|||..|..:|..|.||::|.|.:.:||.||.:  ::..| .|..:..:...|.:|.|....
Zfish   290 THVTCGEQHSALITDSGLLYTFGDGRHGKLGHGDENFTNQFTP-TVCQRFFEYSVMTVACGSSHM 353

  Fly   411 AIFLVKADKQDQK--------------------------ENVP----VKVSGSSSISKKDKTPPQ 445
            .:|.....:::::                          |::|    ..||.|:|:|....|..:
Zfish   354 LVFARPRQQENEEVCLEDEDVTYSYLDRCYTTMIQGQPLEHIPDPESALVSQSTSLSSPLPTSHR 418

  Fly   446 DNVDKEAENVDKQEQKE-----------NLP-------------------------------AKA 468
            .::...|    ::.|||           |||                               |..
Zfish   419 WSLSTRA----RRRQKESSSAQFGPEFSNLPPLTTSYTALALTGTILQPRSAKGTPKHINTDAPV 479

  Fly   469 STS------------------------------SKKNKTPPQDNADKEAENVDKQEQKENLPA-- 501
            .||                              |.||....::|..::|...:.|....:.|:
Zfish   480 DTSITVLSKEPSFTPITKSPDDCQCVETSENSLSDKNSAGREENVFQQALPTELQVASVSHPSIT 544

  Fly   502 KASTSSKKIKTPPQDDAAE---EVEEESAQEPTPKKAKKPAAK 541
            ::.:||..:...|:...||   ||||:|:......|.:....|
Zfish   545 ESQSSSNLMHKKPRPGDAENNAEVEEQSSVTALQSKVQPKIVK 587

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rcc1	NP_523943.1	RCC1	42..89	CDD:278826	14/56 (25%)
		RCC1	92..141	CDD:278826	18/51 (35%)
		RCC1_2	131..158	CDD:290274	15/26 (58%)
		RCC1	144..193	CDD:278826	15/48 (31%)
		RCC1_2	182..209	CDD:290274	6/26 (23%)
		RCC1	363..414	CDD:278826	14/52 (27%)
rpgra	XP_021334464.1	RCC1	5..43	CDD:306840
		RCC1	<31..324	CDD:332518	99/358 (28%)
		RCC1	305..352	CDD:306840	14/47 (30%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C170576199
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1062377at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	4	3.850