Protein Alignment Rcc1 and rpgra

DIOPT Version :10

• Sequence 1: NP_523943.1
• Gene: Rcc1 / 38669
• FlyBaseID: FBgn0002638
• Length: 547
• Species: Drosophila melanogaster
• Sequence 2: XP_021334464.2
• Gene: rpgra / 571327
• ZFINID: ZDB-GENE-070912-423
• Length: 1698
• Species: Danio rerio
• Alignment Length: 628
• Identity: 143/628 - (22%)
• Similarity: 223/628 - (35%)
• Gaps: 209/628 - (33%)

  Fly    39 TVLGNVLVCGNGDVGQLGLG----------EDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSG 93
            |..|.:.|.|:.:.|||||.          ..:|:.:|         |..::.|..|.||.|..|
Zfish    50 TEQGRLFVFGDNNRGQLGLQIKGPVTKPVCVKVLKGER---------AQSVACGTDHTLVSTSQG 105

  Fly    94 DIYSFGCNDEGALGRDTSEDG---SESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRD 155
            :|.:.|.|.:|.||.....|.   ...:|.....|.|.|  ||||..||.|.||||:|.||.  :
Zfish   106 EILAAGGNSDGQLGLGHCNDSISFQRLRPFCDYAPIKLL--SAGDHTSAALTEDGRLFLWGD--N 166

  Fly   156 SHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISG 220
            |.|.:|...|.:...|.:|..|.....::.|..|..::|.:|.|::.|.:..|:|| ||
Zfish   167 SAGQLGFGNDSHALLPKELNMGQSIHWVSCGYRHSALVTDSGDVYSFGESADGRLG-LS------ 224

  Fly   221 EGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFAL 285
                                                                  ||:.....:
Zfish   225 ------------------------------------------------------AHQLANHSY-- 233

  Fly   286 TPIKTE-LKDIRHIAGGQHHTVILTTD-LKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KI 347
             |.:.| |..:..:|.|..||:.||.| |.|  .|..|:|:||||.:..|.:.|..|....: ::
Zfish   234 -PQRVESLHSVLQVACGGKHTLALTEDELYC--FGGGEFGQLGLGTLVFVADSPVAVGHFRKGRV 295

  Fly   348 VSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGD--DELEPIVVVSKNTQGKHMLLASGGGQH 410
            ..|.|||..|..:|..|.||::|.|.:.:||.||.:  ::..| .|..:..:...|.:|.|....
Zfish   296 THVTCGEQHSALITDSGLLYTFGDGRHGKLGHGDENFTNQFTP-TVCQRFFEYSVMTVACGSSHM 359

  Fly   411 AIFLVKADKQDQK--------------------------ENVP----VKVSGSSSISKKDKTPPQ 445
            .:|.....:::::                          |::|    ..||.|:|:|....|..:
Zfish   360 LVFARPRQQENEEVCLEDEDVTYSYLDRCYTTMIQGQPLEHIPDPESALVSQSTSLSSPLPTSHR 424

  Fly   446 DNVDKEAENVDKQEQKE-----------NLP-------------------------------AKA 468
            .::...|    ::.|||           |||                               |..
Zfish   425 WSLSTRA----RRRQKESSSAQFGPEFSNLPPLTTSYTALALTGTILQPRSAKGTPKHINTDAPV 485

  Fly   469 STS------------------------------SKKNKTPPQDNADKEAENVDKQEQKENLPA-- 501
            .||                              |.||....::|..::|...:.|....:.|:
Zfish   486 DTSITVLSKEPSFTPITKSPDDCQCVETSENSLSDKNSAGREENVFQQALPTELQVASVSHPSIT 550

  Fly   502 KASTSSKKIKTPPQDDAAE---EVEEESAQEPTPKKAKKPAAK 541
            ::.:||..:...|:...||   ||||:|:......|.:....|
Zfish   551 ESQSSSNLMHKKPRPGDAENNAEVEEQSSVTALQSKVQPKIVK 593

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rcc1	NP_523943.1	ATS1	42..389	CDD:444065	99/364 (27%)
		Borrelia_P83	<419..>508	CDD:114011	26/192 (14%)
rpgra	XP_021334464.2	ATS1	37..358	CDD:444065	105/387 (27%)