DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rcc1 and sergef

DIOPT Version :10

Sequence 1:NP_523943.1 Gene:Rcc1 / 38669 FlyBaseID:FBgn0002638 Length:547 Species:Drosophila melanogaster
Sequence 2:XP_694032.5 Gene:sergef / 565673 ZFINID:ZDB-GENE-061220-11 Length:397 Species:Danio rerio


Alignment Length:436 Identity:99/436 - (22%)
Similarity:150/436 - (34%) Gaps:111/436 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 GEAEQQPPKAKRARIAFHLELPKRRTVL------------GNVLVCGNGDVGQLGLGEDI-LERK 65
            |.||.|   |:..|:...|:..:.|.|.            |.:||||....||||||..: :...
Zfish    27 GNAEDQ---AEPRRVESGLQEEQIRAVTGGGGHSALISDSGELLVCGQNHKGQLGLGHTLEIMTF 88

  Fly    66 RLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALC 130
            :..|:.|......:|.|....::||..|.:.:.|.|..|.||....:..|.....|.........
Zfish    89 QTCPLPGFGRVQQVSCGWDFTIILTGDGLVLACGSNAFGQLGVSAEKTHSAEPLLLKSFHEPVSS 153

  Fly   131 ISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCC----------SIAS 185
            ::||..|:......|.|:.||:...||....|   ..:..|..|.....|.          .:.:
Zfish   154 VAAGLRHALASTASGCVYQWGTGLSSHAKRML---NPQPVPSHLSSKEPCLVPGFAHVTTQKVIA 215

  Fly   186 GADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATN 250
            |:.|...||..|.||..|..:.|||       |||       .|..|..:.:.|:.         
Zfish   216 GSAHCACLTVNGDVFLWGSNKHGQL-------ISG-------SLFLPLPVALDRSM--------- 257

  Fly   251 YCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKD--IRHIAGGQHHTVILTTDLK 313
                                                     |:|  :..:..|..|.:..|...:
Zfish   258 -----------------------------------------LQDERVSDVHSGWTHLIAQTESGR 281

  Fly   314 CSVVGRPEYGRLGLGD--------VKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSWG 370
            ....||..||:||..|        .:.:|..|..||.|. ....:.||...:.|| :.|:::|||
Zfish   282 VFTWGRSNYGQLGQTDHSMEKQSSDEHLVRSPVEVKALF-GATQISCGSEHNLAV-VGGRVFSWG 344

  Fly   371 SGVNNQLGVGDGDD--ELEPIVVVSKNTQGKHMLLASGGGQHAIFL 414
            ...:...|.|...|  :.:||..::   ....:|:..|.| |::.|
Zfish   345 WNEHGMCGDGSLQDITQPQPIPALA---DAVALLIGCGAG-HSMAL 386

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcc1NP_523943.1 ATS1 42..389 CDD:444065 83/369 (22%)
Borrelia_P83 <419..>508 CDD:114011
sergefXP_694032.5 None
Blue background indicates that the domain is not in the aligned region.

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