DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rcc1 and HERC5

DIOPT Version :9

Sequence 1:NP_523943.1 Gene:Rcc1 / 38669 FlyBaseID:FBgn0002638 Length:547 Species:Drosophila melanogaster
Sequence 2:XP_011530324.2 Gene:HERC5 / 51191 HGNCID:24368 Length:1100 Species:Homo sapiens


Alignment Length:562 Identity:127/562 - (22%)
Similarity:214/562 - (38%) Gaps:165/562 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 RRKALTN-NNNAGE-AEQQPPKAKRARI-------AFHLELPKRRTVLGNVLVCGNGDVGQL--- 55
            |||:..| .:.||: |..||.|:..|::       ..|..| .||..:...|.|..|.:..|   
Human   157 RRKSRRNGRSTAGKAAATQPAKSPGAQLWLFPSAAGLHRAL-LRRVEVTRQLCCSPGRLAVLERG 220

  Fly    56 GLGEDILERKRLSPVAGIPDAV---------DISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTS 111
            |.|..:.:....|..|..|..:         .:..|..|.|:|:..|..:.:   |..::.....
Human   221 GAGVQVHQLLAGSGGARTPKCIKLGKNMKIHSVDQGAEHMLILSSDGKPFEY---DNYSMKHLRF 282

  Fly   112 EDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNK----RTP- 171
            |...:.|        |.:.|:.||.||..|.:.|.:||||  ::.||.:|:   |.|    .|| 
Human   283 ESILQEK--------KIIQITCGDYHSLALSKGGELFAWG--QNLHGQLGV---GRKFPSTTTPQ 334

  Fly   172 -IDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQL 235
             ::.:.|.....|::|..|.:.|:.:|.:::.|..|.||||                  |..|  
Human   335 IVEHLAGVPLAQISAGEAHSMALSMSGNIYSWGKNECGQLG------------------LGHT-- 379

  Fly   236 IITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG 300
                                 ||:.......||:|.|                      :..:|.
Human   380 ---------------------ESKDDPSLIEGLDNQK----------------------VEFVAC 401

  Fly   301 GQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLT-EKIVSVGCGEVCSYAVTID- 363
            |..|:.:||.|......|..::|:||....::.: :|.:|.:|. .::..:.||...:.|...| 
Human   402 GGSHSALLTQDGLLFTFGAGKHGQLGHNSTQNEL-RPCLVAELVGYRVTQIACGRWHTLAYVSDL 465

  Fly   364 GKLYSWGSGVNNQLGVGDGDDELEPIVV---------VSKNTQGKHMLLASGGGQHAIFLVKADK 419
            ||::|:|||.:.|||.|...|:|.|:.|         :..:|..|.:::.:||.|..:..:|.:.
Human   466 GKVFSFGSGKDGQLGNGGTRDQLMPLPVKVSSSEELKLESHTSEKELIMIAGGNQSILLWIKKEN 530

  Fly   420 Q--DQKENVPVKVSG-------------------------------SSSISKKDKT----PPQDN 447
            .  :.|..:|....|                               :.|..:|.:|    |...:
Human   531 SYVNLKRTIPTLNEGTVKRWIADVETKRWQSTKREIQEIFSSPACLTGSFLRKRRTTEMMPVYLD 595

  Fly   448 VDKEAENVDKQ-EQKENLPAKASTSSKKN-------KTPPQD 481
            ::| |.|:.|: .||:.:....:|..|.|       .:|||:
Human   596 LNK-ARNIFKELTQKDWITNMITTCLKDNLLKRLPFHSPPQE 636

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcc1NP_523943.1 RCC1 42..89 CDD:278826 12/58 (21%)
RCC1 92..141 CDD:278826 10/48 (21%)
RCC1_2 131..158 CDD:290274 11/26 (42%)
RCC1 144..193 CDD:278826 16/54 (30%)
RCC1_2 182..209 CDD:290274 7/26 (27%)
RCC1 363..414 CDD:278826 20/60 (33%)
HERC5XP_011530324.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.920

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