DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rcc1 and rcbtb2

DIOPT Version :9

Sequence 1:NP_523943.1 Gene:Rcc1 / 38669 FlyBaseID:FBgn0002638 Length:547 Species:Drosophila melanogaster
Sequence 2:NP_001004950.1 Gene:rcbtb2 / 448359 XenbaseID:XB-GENE-952598 Length:526 Species:Xenopus tropicalis


Alignment Length:348 Identity:86/348 - (24%)
Similarity:132/348 - (37%) Gaps:100/348 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 VLVCGNGDVGQLGLG--EDILERKRLSPVAGIPDAVDISAG-GMHNLVLTKSGDIYSFGCNDEGA 105
            |.|.|....|.||.|  :.|||.:|:..::| ...|.:|.| |.|.:::|..|::||:|.|....
 Frog    42 VFVMGTNSSGCLGTGDAQSILEPRRIDMLSG-KRIVSLSYGSGPHVVIVTSDGEVYSWGHNAYSQ 105

  Fly   106 LGRDTSEDG---SESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGN 167
            ||..::...   .:...:||:  .||:.::.|..||..|..||.|:|||  .::.|.:|.....|
 Frog   106 LGNGSTNQALSPCQVSTNLIN--KKAISVACGSHHSMVLTCDGEVYAWG--YNNSGQVGSGSTAN 166

  Fly   168 KRTP---IDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDL 229
            :..|   ...::......||.|....:.:...|:|:..|....||||.         |..|.   
 Frog   167 QPIPRKVTSCLQNKTVIGIACGQMSSMAVVDNGEVYAWGYNGNGQLGL---------GSSGN--- 219

  Fly   230 LRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKD 294
             :||...|.                                             ||..|:.|   
 Frog   220 -QPTPCRIA---------------------------------------------ALQGIRVE--- 235

  Fly   295 IRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGD-------VKDVVEKPTIVKKLTEKIVSVGC 352
              .:..|..||:.||.:......|...||:||.|:       |:.:|:|        |:||.:. 
 Frog   236 --QVVCGYAHTLALTDEGVMYAWGANSYGQLGTGNKSNQSYPVQVIVDK--------ERIVEIA- 289

  Fly   353 GEVC-----SYAVTIDGKLYSWG 370
              .|     |.|.:..|::|.||
 Frog   290 --ACHSSHTSAAKSQSGQVYMWG 310

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcc1NP_523943.1 RCC1 42..89 CDD:278826 17/47 (36%)
RCC1 92..141 CDD:278826 14/51 (27%)
RCC1_2 131..158 CDD:290274 10/26 (38%)
RCC1 144..193 CDD:278826 13/51 (25%)
RCC1_2 182..209 CDD:290274 6/26 (23%)
RCC1 363..414 CDD:278826 4/8 (50%)
rcbtb2NP_001004950.1 ATS1 <17..269 CDD:227511 73/294 (25%)
RCC1 250..298 CDD:366085 13/58 (22%)
BTB_POZ 349..465 CDD:365784
BACK_RCBTB2 462..526 CDD:350604
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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