DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rcc1 and Rpgr

DIOPT Version :9

Sequence 1:NP_523943.1 Gene:Rcc1 / 38669 FlyBaseID:FBgn0002638 Length:547 Species:Drosophila melanogaster
Sequence 2:XP_038955861.1 Gene:Rpgr / 367733 RGDID:1560136 Length:1380 Species:Rattus norvegicus


Alignment Length:625 Identity:156/625 - (24%)
Similarity:240/625 - (38%) Gaps:172/625 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 VLGN--VLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISA-GGMHNLVLTKSGDIYSFGCN 101
            |.||  :.:.|:.:.||||||......|.....|..|:.|.::| |..|.||.|.:|.:|:.|.|
  Rat    88 VTGNNKLYMFGSNNWGQLGLGSKSAISKPTCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGGN 152

  Fly   102 DEGALGRDTSED-------GSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGN 159
            :||.||...::|       |..:..|:|..      :|||.:.||.|.|||::|.||.  :|.|.
  Rat   153 NEGQLGLGDTDDRDTFHQIGFFTPSDIIKQ------LSAGANTSAALTEDGKLFMWGD--NSEGQ 209

  Fly   160 MGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRR 224
            :||....|...|.::..|.....|:.|..|...:||.|:::|.|..|.|:||             
  Rat   210 IGLKNKSNVCIPHEVTVGKPISWISCGYYHSAFVTTDGELYTFGEPENGKLG------------- 261

  Fly   225 GKRDLLRPTQLIITRAKP----------FEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETK 279
                  .|.||:|....|          .:......:...:.|   :|::|.||..|.||...|.
  Rat   262 ------LPNQLLINHRSPQRVLGIPDKVIQVACGGGHTVVLTE---KVVYAFGLGQFGQLGLGTF 317

  Fly   280 GKEFALTPIKTELKD--IRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEK--PTIV 340
            ..|.:...|...:||  |.||:.|::||.::|........|...:|:|||| :::...:  ||:.
  Rat   318 LFETSEPKIIDRIKDQKISHISCGENHTALMTDIGLMYTFGDGRHGKLGLG-MENFTNQFFPTLC 381

  Fly   341 K---KLTEKIVSVGCGEVCSYAV----TID--------------GKL----YSWGSGVNNQLG-- 378
            .   |.|.::::.|...:..:|.    |||              |.|    .|.||.:|..|.  
  Rat   382 SNFLKFTVQLIACGGCHMLVFATPRLGTIDETEFEEVYEPYMSTGSLSINDLSPGSSLNRSLSAR 446

  Fly   379 ---------------VGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKADKQDQKENVPV 428
                           ||    .|.|:...|.:|...:.                    ...::|.
  Rat   447 LRRRERERPSCSASMVG----TLPPLEGTSASTSASYF--------------------SPSSIPF 487

  Fly   429 KVSGSS--SISKKDKTPPQD--------NVDKEAEN---VDKQEQKE-----NLPAKASTSSKK- 474
            ::|.::  ..|..|.|.|.|        |.:.|.||   ||.:...|     |:....:|||.: 
  Rat   488 RLSVNNYPEKSTSDSTEPLDSDYFEDKMNKETETENSSAVDLENFGETIDILNMTHMMTTSSNEK 552

  Fly   475 -------NKTPPQDNADK------EAENVDKQEQKENLPAKASTSSKK--------IKTP----- 513
                   .|...||..:|      ..||.|..|.:|....|..|..|:        |:.|     
  Rat   553 SLDFSPIQKQQNQDTVEKVVESTPYTENEDSYEYEEMSKIKEGTVYKQYLAKGIFMIRAPEILGT 617

  Fly   514 -PQDDAAEEVEEESAQEPTPKKAKKPAAKR-----GGKKT 547
             ..::....:::|..|..|..|:::...:|     ..|||
  Rat   618 FSDEEGGNSLDQEELQAFTGVKSEQVGKERDEEIDSEKKT 657

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcc1NP_523943.1 RCC1 42..89 CDD:278826 17/49 (35%)
RCC1 92..141 CDD:278826 17/55 (31%)
RCC1_2 131..158 CDD:290274 13/26 (50%)
RCC1 144..193 CDD:278826 15/48 (31%)
RCC1_2 182..209 CDD:290274 9/26 (35%)
RCC1 363..414 CDD:278826 14/85 (16%)
RpgrXP_038955861.1 ATS1 <78..368 CDD:227511 92/309 (30%)
RCC1 352..398 CDD:395335 11/46 (24%)
MDN1 <625..904 CDD:227596 8/33 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166337068
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.750

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