DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rcc1 and Als2

DIOPT Version :10

Sequence 1:NP_523943.1 Gene:Rcc1 / 38669 FlyBaseID:FBgn0002638 Length:547 Species:Drosophila melanogaster
Sequence 2:NP_001013431.1 Gene:Als2 / 363235 RGDID:1310372 Length:1651 Species:Rattus norvegicus


Alignment Length:635 Identity:128/635 - (20%)
Similarity:204/635 - (32%) Gaps:248/635 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 PKR------RTVL-------GNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDA-------VDI 79
            |:|      :|||       ..||:..:|:|...|......|...:.|.:.:.::       |.:
  Rat    32 PERLPGWGGKTVLQAALGVKHGVLLTEDGEVYSFGTLPWKSEAAEICPSSPLLESALVGHHVVTV 96

  Fly    80 SAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID-------LPGKALCISAGDSH 137
            :.|..|:..:|:||.:|.:|.|..|.......:..||..|..|.       |..:.|.::.|:.|
  Rat    97 ATGSFHSGAVTESGVVYMWGENAAGQCAVANQQYVSEPSPVSISDSETSPLLAVRILQLACGEEH 161

  Fly   138 SACLLEDGRVFAWGSFRDSHG-NMGL---TIDGNKRTPIDLMEGTVCCSIASGA----------- 187
            :..|.....::|||:     | .:||   |....|...::.:.|.|...:|.||           
  Rat   162 TLALSISREIWAWGT-----GCQLGLITTTFPVTKPQKVEHLAGRVVLQVACGAFHSLALVQCLP 221

  Fly   188 -------------------------DHLVI-------------------------------LTTA 196
                                     ||::|                               |...
  Rat   222 PQDLKPVPERCNQCSQLLITMTDKEDHVIISDSHCCPLGVTLSESQAEKHASTVTSPHPETLDGQ 286

  Fly   197 GKVF---------------------------TVGCAE----------------QGQLGRLSERSI 218
            |:||                           .||.||                ...|.:|||.|:
  Rat   287 GEVFENTVAEAELNMGSDQTTSGSAISAQQNIVGMAEVSSARTAPSYPDTQTVTAYLQKLSEHSV 351

  Fly   219 SGEGRRGKR-------------DLLRP--------TQLIITRAK--------PFEA--------- 245
            .....|.::             ||..|        ..|:::.|.        .:||         
  Rat   352 KENHEREEKLPQVQPLVEEAVPDLHSPPTTSTSALNSLVVSCASAVGVRVAATYEAGALSLKKVM 416

  Fly   246 -IWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIR--HIAGGQH---- 303
             .::|..|.....|.|.   :||..:.|.|..|...:|.......:.|.|||  ...||..    
  Rat   417 NFYSTAPCEPGAPSGTA---STGPESLKDLREEQVKQESLQGKKSSSLMDIREEESEGGSRRLSL 478

  Fly   304 --------------------HTVILT-----------TDLKCSV--VGRPEYGRLGLGDVKDVVE 335
                                .||:||           ..|:..|  .|:.:.|:||.|||...::
  Rat   479 PGLLSQVSPRLLRKAARVKTRTVVLTPTYSGEADALLPSLRTEVWTWGKGKEGQLGHGDVLPRLQ 543

  Fly   336 KPTIVKKLTEK-IVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVV--VSKNTQ 397
             |..||.|..| ::.:..|...|.|:|...::|||||....|||..:     .|..|  :||.:.
  Rat   544 -PLCVKCLDGKEVIHLEAGGSHSLALTAKSQVYSWGSNTFGQLGHSE-----FPTTVPRLSKVSS 602

  Fly   398 GKHMLLASGGGQHAIFLVKAD----------KQDQKE--NVPVKVSGSSS 435
            ...:...:.|..:::|||..:          :||:.|  .:|...||:::
  Rat   603 ESGVWSVAAGHGYSLFLVDTEDFQPGLYYSGRQDRAEGDTLPENPSGTTT 652

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcc1NP_523943.1 ATS1 42..389 CDD:444065 109/553 (20%)
Borrelia_P83 <419..>508 CDD:114011 6/19 (32%)
Als2NP_001013431.1 ATS1 <18..219 CDD:444065 44/191 (23%)
RCC1 1 59..108 8/48 (17%)
RCC1 2 109..167 15/57 (26%)
RCC1 3 169..218 13/53 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 444..476 8/31 (26%)
RCC1 4 519..570 16/51 (31%)
ATS1 522..>622 CDD:444065 33/105 (31%)
RCC1 5 572..621 15/53 (28%)
RhoGEF 689..873 CDD:470622
PH_alsin 899..1004 CDD:241423
COG4642 <1012..1243 CDD:443680
MORN 1 1043..1065
MORN 2 1066..1088
MORN 3 1094..1116
MORN 4 1117..1139
MORN 5 1145..1167
MORN 6 1169..1191
MORN 7 1192..1214
MORN 8 1215..1238
VPS9 1546..1650 CDD:460489
Blue background indicates that the domain is not in the aligned region.

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