DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rcc1 and tag-229

DIOPT Version :9

Sequence 1:NP_523943.1 Gene:Rcc1 / 38669 FlyBaseID:FBgn0002638 Length:547 Species:Drosophila melanogaster
Sequence 2:NP_001021670.1 Gene:tag-229 / 3565487 WormBaseID:WBGene00044065 Length:200 Species:Caenorhabditis elegans


Alignment Length:78 Identity:19/78 - (24%)
Similarity:31/78 - (39%) Gaps:24/78 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   406 GGGQHAI----FLVKADKQDQKENVPVKVSGSSSISKKDKTPP------QDN------------V 448
            |..:|||    ||..|  ..:.:|...:.:.:..|..:|:..|      |:|            |
 Worm   111 GWDEHAIAPEKFLKVA--HGENKNYATQPNYAVLIDTRDRLTPQLSYIVQENLEIDKGTVMHPLV 173

  Fly   449 DKEAENVDKQEQK 461
            ||..:..|::.||
 Worm   174 DKFFDGFDEKRQK 186

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcc1NP_523943.1 RCC1 42..89 CDD:278826
RCC1 92..141 CDD:278826
RCC1_2 131..158 CDD:290274
RCC1 144..193 CDD:278826
RCC1_2 182..209 CDD:290274
RCC1 363..414 CDD:278826 4/11 (36%)
tag-229NP_001021670.1 YccV-like 89..186 CDD:382598 17/76 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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