DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rcc1 and CG9135

DIOPT Version :10

Sequence 1:NP_523943.1 Gene:Rcc1 / 38669 FlyBaseID:FBgn0002638 Length:547 Species:Drosophila melanogaster
Sequence 2:NP_608985.1 Gene:CG9135 / 33850 FlyBaseID:FBgn0031769 Length:487 Species:Drosophila melanogaster


Alignment Length:455 Identity:101/455 - (22%)
Similarity:153/455 - (33%) Gaps:167/455 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 TVLGNV----LVCGNGDVGQLGLGEDI--LERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYS 97
            |:|.|:    |..|....|||||.:||  .|:..:.|.....:.|..:.|..|.|.||.:|.:|:
  Fly   128 TILINMDRKALGFGRNPSGQLGLSQDIKLAEKPTIIPALEQLNIVQAAVGRHHTLFLTDTGTVYA 192

  Fly    98 FGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGL 162
            .|.|..|..|                         .|::|:       .:::             
  Fly   193 CGENKSGQCG-------------------------VGNTHA-------NIYS------------- 212

  Fly   163 TIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKR 227
                  .|||: ..|.....|..||:..|||...|.:.|.|..|.||||.               
  Fly   213 ------PTPIN-YRGPPIIRIGCGAEFSVILDIKGSLHTFGLPEYGQLGH--------------- 255

  Fly   228 DLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIK-TE 291
                     .|.||.|.   ..|..:|..|:..:          |.:.:..|.||..:||:. .:
  Fly   256 ---------NTDAKYFV---NANKLSFHFETSPK----------KVVLYIEKSKEGHVTPVDGVQ 298

  Fly   292 LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKD------------------------ 332
            :.|   .|.|.:|||.:.:..:....|...:||||..:.||                        
  Fly   299 IVD---FACGNNHTVAIDSKKRVYSWGFGGFGRLGHAEPKDEMVPRLMKFFDTQGRGGRSVFCGS 360

  Fly   333 ----VVEK-------------------PTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWG-SG 372
                :|.:                   |..|:.|:. .|..:||... |..::.|..|.:|| |.
  Fly   361 TFSLIVNELGLLFLFGQNKKTGEANMYPKPVQDLSGWNITDIGCANT-SIMISADDTLIAWGASP 424

  Fly   373 VNNQLGVGDGDDELEPIVVVSK------NTQGKHMLLASGGGQHAIFLV----KADKQDQKENVP 427
            ...:||:|    |.:....|.|      |.:...:.:   |..|.:.||    :|.|| :.|.:|
  Fly   425 TFGELGIG----EFQKSSTVPKEVPKLDNIKIPQVTM---GYSHTVLLVDTTHEATKQ-KYEKMP 481

  Fly   428  427
              Fly   482  481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcc1NP_523943.1 ATS1 42..389 CDD:444065 87/402 (22%)
Borrelia_P83 <419..>508 CDD:114011 4/9 (44%)
CG9135NP_608985.1 ATS1 119..469 CDD:444065 96/440 (22%)

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