DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rcc1 and herc1

DIOPT Version :10

Sequence 1:NP_523943.1 Gene:Rcc1 / 38669 FlyBaseID:FBgn0002638 Length:547 Species:Drosophila melanogaster
Sequence 2:XP_021333508.2 Gene:herc1 / 336598 ZFINID:ZDB-GENE-030131-8542 Length:4867 Species:Danio rerio


Alignment Length:395 Identity:96/395 - (24%)
Similarity:152/395 - (38%) Gaps:109/395 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 GNVLVCGNGDVGQLGLG----EDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCND 102
            |:|..||.|..|:||||    :..|::....|...|...........|.|..|..|:::|:|..|
Zfish   417 GSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRAIKKVSSSKGSDGHTLAFTSEGEVFSWGDGD 481

  Fly   103 EGALGRDTSEDGSESKPDLID--LPGK-ALCISAGDSHSACLLEDGRVFAWGS---FRDSHGNMG 161
            .|.||...|  .::..|.||.  |.|| .:|:|||..|||.:.|||.::.||.   .|..||   
Zfish   482 YGKLGHGNS--STQKYPKLIQGPLQGKVVVCVSAGYRHSAAVSEDGELYTWGEGDFGRLGHG--- 541

  Fly   162 LTIDGNKRTPIDLME-----GTVCCSIASGADHLVILTTAGK-VFTVGCAEQGQLGRLSERSISG 220
               |.|.|....|::     |.|.|    |:.|.:.|:..|: |::.|..:.|:||.       |
Zfish   542 ---DSNSRNIPTLVKDISNVGEVSC----GSSHTIALSKDGRTVWSFGGGDNGKLGH-------G 592

  Fly   221 EGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFAL 285
            :..|            :.:.|..||:                   .|:                 
Zfish   593 DTNR------------VYKPKVVEAL-------------------QGM----------------- 609

  Fly   286 TPIKTELKDIRHIAGGQHHTVILTTDLK-----CSVVGRPEYGRLGLGDVKDVVEKPTIVKKL-T 344
                    .||.:..|...::.||:..:     |...       ||.|..:....:|.::::| |
Zfish   610 --------FIRKVCAGSQSSLALTSTGQVYAWGCGAC-------LGCGSSEATALRPKLIEELAT 659

  Fly   345 EKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSK--NTQGKHMLLASGG 407
            .::|.:..|:....|::.|.::|:||:....|.|.|:...   ||....|  ...|..:...|.|
Zfish   660 TRVVDISIGDSHCLALSHDNEVYAWGNNSMGQCGQGNSTG---PITKPKKVIGLDGVAIQQISAG 721

  Fly   408 GQHAI 412
            ..|::
Zfish   722 TSHSL 726

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcc1NP_523943.1 ATS1 42..389 CDD:444065 89/368 (24%)
Borrelia_P83 <419..>508 CDD:114011
herc1XP_021333508.2 None
Blue background indicates that the domain is not in the aligned region.

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