DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rcc1 and HERC2

DIOPT Version :10

Sequence 1:NP_523943.1 Gene:Rcc1 / 38669 FlyBaseID:FBgn0002638 Length:547 Species:Drosophila melanogaster
Sequence 2:NP_608388.2 Gene:HERC2 / 33035 FlyBaseID:FBgn0031107 Length:4912 Species:Drosophila melanogaster


Alignment Length:413 Identity:111/413 - (26%)
Similarity:173/413 - (41%) Gaps:74/413 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 GNGDVGQLGLGEDILERKRL---SPVAGIP--DAVDISAGGMHNLVLTKSGDIYSFGCNDEGALG 107
            |:...|||| |   ||..|:   :|...:.  ..|.::.|......:|..|.:::.|....|.||
  Fly  4055 GHNHRGQLG-G---LEGSRIKTPTPCEALSLLRPVQLAGGEQSLFAVTPDGKLFATGYGSGGRLG 4115

  Fly   108 RDTSEDGSESKPDLIDLPG-------KALCISAGDSHSACLLEDGRVFAWGSFRD---SHGNMGL 162
            ...|:  |.:.|.|:   |       |.:.:::|..|...|..:|.|:|||...|   .|||. :
  Fly  4116 VGGSD--SWAIPTLL---GSLQHVFVKKVAVNSGGKHCLALTTEGEVYAWGEGEDGKLGHGNR-M 4174

  Fly   163 TIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKR 227
            :.|..|.  ::.:.|.....||.|:.|...:|.:|.|.|.|   :|:.|||        |.....
  Fly  4175 SYDRPKL--VEHLNGMSVADIACGSAHSAAITASGHVLTWG---KGRYGRL--------GHGDSE 4226

  Fly   228 DLLRPTQLIITRAKPFEAIW---ATNYCTFMRESQTQVI------WATGLNNFKQLAHETKGKEF 283
            |.|||        |..||:.   |.:......::||..|      |:.|..::.:|..  .|.:.
  Fly  4227 DQLRP--------KLVEALLGYRAIDIACGSGDAQTLCITDDDNVWSWGDGDYGKLGR--GGSDG 4281

  Fly   284 ALTPIKTELKDIRHIAG--------GQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIV 340
            ...|.|     |..:||        |...:|.||........|:.::.|||.|.| |.|.:|..|
  Fly  4282 CKLPYK-----IESLAGLGVVKVECGSQFSVALTKSGAVYTWGKGDFHRLGHGSV-DHVRRPKKV 4340

  Fly   341 KKLT-EKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLA 404
            ..|. :||:|:..|.:...|.:..|::|:||.....|||.|.......|.:|.:  .||||::..
  Fly  4341 AALQGKKIISIATGSLHCVACSDSGEVYTWGDNDEGQLGDGTVTAIQRPRLVAA--LQGKHIVKV 4403

  Fly   405 SGGGQHAIFLVKADKQDQKENVP 427
            :.|..|.:.|..:...::...:|
  Fly  4404 TCGSAHTLALSTSQLSERLRPLP 4426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcc1NP_523943.1 ATS1 42..389 CDD:444065 101/373 (27%)
Borrelia_P83 <419..>508 CDD:114011 1/9 (11%)
HERC2NP_608388.2 ATS1 625..>894 CDD:444065
Cyt-b5 1292..1364 CDD:459698
MIB_HERC2 1928..1988 CDD:461991
UBA_HERC2 2515..2559 CDD:270585
Cul7 2624..2699 CDD:463286
APC10-HERC2 2762..2932 CDD:176485
ATS1 2987..3320 CDD:444065
RCC1 3302..3350 CDD:395335
ATS1 4050..4389 CDD:444065 101/372 (27%)
HECTc 4509..4880 CDD:238033
Blue background indicates that the domain is not in the aligned region.

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