DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rcc1 and Ibtk

DIOPT Version :9

Sequence 1:NP_523943.1 Gene:Rcc1 / 38669 FlyBaseID:FBgn0002638 Length:547 Species:Drosophila melanogaster
Sequence 2:XP_038938472.1 Gene:Ibtk / 315858 RGDID:1311697 Length:1352 Species:Rattus norvegicus


Alignment Length:362 Identity:85/362 - (23%)
Similarity:139/362 - (38%) Gaps:94/362 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 TKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKA--------LCISAGDSHSACLLEDGR 146
            |...::|::|.|....||.  ....|:..|:|:||..::        ||    ..||..|.:.|:
  Rat   139 TDPTEVYTWGDNTNFTLGH--GSQNSKHHPELLDLFSRSRVYVKQVVLC----KFHSVFLSQQGQ 197

  Fly   147 VFAWGSFRDSHGNMGLTIDGNKRT---P--IDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAE 206
            |:..|     ||..|....|:::|   |  ::.:.|..|..:|:..||.|:||..|.|:|.|...
  Rat   198 VYTCG-----HGRGGRLGHGDEQTCLVPRLVEGLSGHSCSQVAAAKDHTVVLTEDGCVYTFGLNT 257

  Fly   207 QGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNF 271
            ..|||.:...|.....|:.:...|:...:|...|..|..:..|.          :.::..|||. 
  Rat   258 FHQLGIIPPPSSCNVPRQIQAKYLKGRTIIGVAAGRFHTVLWTR----------EAVYTLGLNG- 311

  Fly   272 KQLAH--ETKGKEFALTPIKTEL---KDI--RHIAGGQHHTVILTT--------DLKCSVVGRPE 321
            .||.|  :..|::...||.:...   |||  ..:|.....||.:||        |.:|       
  Rat   312 GQLGHLLDPNGEKCVTTPRQVSALHHKDIAVSLVAASDGATVCVTTRGDIYLLADYQC------- 369

  Fly   322 YGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGE---------------VCSYAVTIDGKLYSWGS 371
                     |.:..|...:||:   :||.||.|               :|..|:...|:::.|.|
  Rat   370 ---------KKMATKQLNLKKV---LVSGGCMEYKVDPEHLTENGGQKICILAMDGAGRVFCWRS 422

  Fly   372 ----------GVNNQLGVGDGDDELEPIVVVSKNTQG 398
                      ....|:.:.|.......|:.|:::.:|
  Rat   423 LSSSLKQCRWAYPRQVSISDIALNRNEILFVTQDGEG 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcc1NP_523943.1 RCC1 42..89 CDD:278826
RCC1 92..141 CDD:278826 14/56 (25%)
RCC1_2 131..158 CDD:290274 6/26 (23%)
RCC1 144..193 CDD:278826 15/53 (28%)
RCC1_2 182..209 CDD:290274 10/26 (38%)
RCC1 363..414 CDD:278826 8/46 (17%)
IbtkXP_038938472.1 Ank_2 <45..116 CDD:403870
ANK repeat 51..82 CDD:293786
ANK repeat 84..116 CDD:293786
ATS1 139..>341 CDD:227511 58/223 (26%)
RCC1 247..299 CDD:395335 13/51 (25%)
BTB1_POZ_IBtk 547..652 CDD:349610
BTB2_POZ_IBtk 764..876 CDD:349611
BACK_IBtk 872..931 CDD:350575
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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