| Sequence 1: | NP_523943.1 | Gene: | Rcc1 / 38669 | FlyBaseID: | FBgn0002638 | Length: | 547 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | XP_017451567.1 | Gene: | Herc1 / 315771 | RGDID: | 1306366 | Length: | 4876 | Species: | Rattus norvegicus |
| Alignment Length: | 417 | Identity: | 100/417 - (23%) |
|---|---|---|---|
| Similarity: | 166/417 - (39%) | Gaps: | 90/417 - (21%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 42 GNVLVCGNGDVGQLGLG--EDILERKRLSPVAG--IPDAVDISAGGMHNLVLTKSGDIYSFGCND 102
Fly 103 EGALGRDTSEDGSESKPDLID-LPGKALC-ISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTID 165
Fly 166 GNKRTP--IDLMEGTVCCSIASGADHLVILTTAGK-VFTVGCAEQGQLGRLSERSISGEGRRGKR 227
Fly 228 DLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTEL 292
Fly 293 KDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIV-SVGCGEVC 356
Fly 357 SYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKADKQD 421
Fly 422 QKENVPVKVSGSS---SISKKDKTPPQ 445 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| Rcc1 | NP_523943.1 | RCC1 | 42..89 | CDD:278826 | 15/50 (30%) |
| RCC1 | 92..141 | CDD:278826 | 18/50 (36%) | ||
| RCC1_2 | 131..158 | CDD:290274 | 9/26 (35%) | ||
| RCC1 | 144..193 | CDD:278826 | 15/50 (30%) | ||
| RCC1_2 | 182..209 | CDD:290274 | 6/27 (22%) | ||
| RCC1 | 363..414 | CDD:278826 | 18/50 (36%) | ||
| Herc1 | XP_017451567.1 | RCC1 | 421..472 | CDD:278826 | |
| RCC1 | 476..526 | CDD:278826 | |||
| RCC1 | 529..576 | CDD:278826 | |||
| RCC1 | 579..629 | CDD:278826 | |||
| RCC1 | 633..680 | CDD:278826 | |||
| RCC1_2 | 667..696 | CDD:290274 | |||
| RCC1 | 683..733 | CDD:278826 | |||
| SPRY_HERC1 | 2030..2187 | CDD:293939 | |||
| UBA_HERC1 | 2751..2794 | CDD:270584 | |||
| WD40 | 3409..3793 | CDD:225201 | |||
| WD40 | 3439..3790 | CDD:295369 | |||
| WD40 repeat | 3447..3490 | CDD:293791 | |||
| WD40 repeat | 3504..3539 | CDD:293791 | |||
| WD40 repeat | 3544..3591 | CDD:293791 | |||
| WD40 repeat | 3600..3638 | CDD:293791 | |||
| WD40 repeat | 3644..3679 | CDD:293791 | |||
| WD40 repeat | 3687..3718 | CDD:293791 | |||
| WD40 repeat | 3765..3801 | CDD:293791 | |||
| RCC1 | 4060..4112 | CDD:278826 | 15/50 (30%) | ||
| RCC1 | 4115..4164 | CDD:278826 | 18/50 (36%) | ||
| RCC1 | 4167..4216 | CDD:278826 | 15/50 (30%) | ||
| RCC1 | 4219..4269 | CDD:278826 | 13/112 (12%) | ||
| RCC1 | 4272..4321 | CDD:278826 | 8/49 (16%) | ||
| RCC1_2 | 4308..4337 | CDD:290274 | 8/28 (29%) | ||
| RCC1 | 4325..4373 | CDD:278826 | 18/49 (37%) | ||
| HECTc | 4488..4856 | CDD:238033 | |||
| HECTc | 4519..4852 | CDD:214523 | |||
| Blue background indicates that the domain is not in the aligned region. | |||||
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 1 | 0.930 | - | - | C166337069 | |
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 0 | 0.000 | Not matched by this tool. | |||
| Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoDB | 1 | 1.010 | - | - | D1062377at2759 | |
| OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
| Panther | 0 | 0.000 | Not matched by this tool. | |||
| Phylome | 0 | 0.000 | Not matched by this tool. | |||
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 1 | 1.000 | - | - | ||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 3 | 2.940 | |||||