DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rcc1 and HECTD4

DIOPT Version :9

Sequence 1:NP_523943.1 Gene:Rcc1 / 38669 FlyBaseID:FBgn0002638 Length:547 Species:Drosophila melanogaster
Sequence 2:NP_001103132.4 Gene:HECTD4 / 283450 HGNCID:26611 Length:4428 Species:Homo sapiens


Alignment Length:654 Identity:118/654 - (18%)
Similarity:193/654 - (29%) Gaps:239/654 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 TNNNNAGEAEQQPP--------KAKRARIAFHLELPKRRTVLGNVLVCGNG-------------- 50
            :::::.|:..|.|.        |.||.:.:...:....|||..:..|...|              
Human  3304 SSSSSPGQTPQSPSLLSKRKKVKMKREKASSSGKRQSSRTVDSDPTVLSIGGSKPEDMLWFHRAL 3368

  Fly    51 ------------DVGQLGLGEDIL-----------ERKRLSPVAGIPDAVD--ISAGGMHNLVLT 90
                        |...||:..|.:           ...||..::|||..:|  :..|.:..    
Human  3369 TLLIILRHLTRKDPQGLGVTSDAIADACQALVGPTAHSRLLVISGIPTHLDEGVVRGAIRK---- 3429

  Fly    91 KSGDIYSFGCNDEGALGRD------TSED---------GSESKPDLIDLPGKALCISAGDSHSAC 140
                    .||..|.:.:|      ..||         |.:.|.:    |.|.|.....||....
Human  3430 --------ACNAHGGVFKDEIYIPLQEEDTKKPKDKAEGGDGKVE----PEKTLAFPGTDSMEVS 3482

  Fly   141 LLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCS--------------IASGAD--- 188
                         ..|.....::|..:..|    .:.::|.|              :.:|.:   
Human  3483 -------------TSSSLTPAMSISASAST----SQASICSSQGISQTVSDLSVDPLPAGLELPI 3530

  Fly   189 -------HLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAI 246
                   |.|....:..:........|.||.|.|                          |.:  
Human  3531 PPGLLEPHAVSSQESLDISLCSTGSLGSLGSLGE--------------------------PLD-- 3567

  Fly   247 WATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELK------------DIRHIA 299
               |..|........:...|.|:|....|...||  ||:..|::..|            |:..::
Human  3568 ---NAETASVSDMGSMYTVTSLDNQPLAARPIKG--FAVVEIRSRAKIEKIRASLFNNNDLIGLS 3627

  Fly   300 G--GQHHTVILTTD--LKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAV 360
            .  |:...:.::|:  |..|||.:..:...|...::|.....:|   ..||:|. |..||.:   
Human  3628 SLDGEDELMEMSTEEILTVSVVNQSLFDTQGSPGLEDYFNDKSI---KGEKLVP-GAREVLT--- 3685

  Fly   361 TIDGKLYSWGSGVNNQLGVGDGDDELEPI----VVVSK---NTQGKHMLLASGGGQHAIFL-VKA 417
                :::...:.....|.:    ...:||    :.:||   |:|....||      |..|. |:.
Human  3686 ----EIFKSCAHSEQTLSL----TPAKPIRVSDIYLSKEQINSQTPGNLL------HLFFTNVRP 3736

  Fly   418 DK---QDQ------KENVPVKVSGSSSISKKDKTPPQDNVDKEAENVDKQEQKENLPAK-ASTSS 472
            .|   :||      |..||......|..||..                    ||..|.| .||..
Human  3737 PKKVLEDQLTQILRKYGVPKPKFDKSKYSKAG--------------------KEQHPVKVVSTKR 3781

  Fly   473 KKNKTPPQDNADKEAENVDKQEQKENLPAKASTSSKKIKTPPQDDAAEEVEEESAQEPTPKKAKK 537
            ...|.|.:|.|            ..|..::.:.|.||....|:.....:.:|:..::...||.:.
Human  3782 PITKPPAKDKA------------VLNSVSRTALSEKKPTVKPKSPEKSKPDEKDPEKSPTKKQEV 3834

  Fly   538 PAAK 541
            |..|
Human  3835 PEEK 3838

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcc1NP_523943.1 RCC1 42..89 CDD:278826 13/85 (15%)
RCC1 92..141 CDD:278826 13/63 (21%)
RCC1_2 131..158 CDD:290274 3/26 (12%)
RCC1 144..193 CDD:278826 8/72 (11%)
RCC1_2 182..209 CDD:290274 4/50 (8%)
RCC1 363..414 CDD:278826 10/57 (18%)
HECTD4NP_001103132.4 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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