DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rcc1 and IBTK

DIOPT Version :9

Sequence 1:NP_523943.1 Gene:Rcc1 / 38669 FlyBaseID:FBgn0002638 Length:547 Species:Drosophila melanogaster
Sequence 2:XP_006715516.1 Gene:IBTK / 25998 HGNCID:17853 Length:1394 Species:Homo sapiens


Alignment Length:402 Identity:90/402 - (22%)
Similarity:150/402 - (37%) Gaps:110/402 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 TKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKA--------LCISAGDSHSACLLEDGR 146
            |...|:|::|.|....||.  ....|:..|:|:||..::        ||    ..||..|.:.|:
Human   139 TDPTDVYTWGDNTNFTLGH--GSQNSKHHPELVDLFSRSGIYIKQVVLC----KFHSVFLSQKGQ 197

  Fly   147 VFAWGSFRDSHGNMGLTIDGNKRT---P--IDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAE 206
            |:..|     ||..|....|:::|   |  ::.:.|..|..:|:..||.|:||..|.|:|.|...
Human   198 VYTCG-----HGPGGRLGHGDEQTCLVPRLVEGLNGHNCSQVAAAKDHTVVLTEDGCVYTFGLNI 257

  Fly   207 QGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNF 271
            ..|||.:...|.....|:.:...|:...:|...|..|..:..|.          :.::..|||. 
Human   258 FHQLGIIPPPSSCNVPRQIQAKYLKGRTIIGVAAGRFHTVLWTR----------EAVYTMGLNG- 311

  Fly   272 KQLA--HETKGKEFALTPIKTEL---KDI--RHIAGGQHHTVILTT--------DLKCSVVGRPE 321
            .||.  .:..|::....|.:...   |||  ..:|.....||.:||        |.:|       
Human   312 GQLGCLLDPNGEKCVTAPRQVSALHHKDIALSLVAASDGATVCVTTRGDIYLLADYQC------- 369

  Fly   322 YGRLGLGDVKDVVEKPTIVKKL------------TEKIVSVGCGEVCSYAVTIDGKLYSWGSGVN 374
                     |.:..|...:||:            .|.:...|..::|..|:...|:::.|.| ||
Human   370 ---------KKMASKQLNLKKVLVSGGHMEYKVDPEHLKENGGQKICILAMDGAGRVFCWRS-VN 424

  Fly   375 N-----------QLGVGDGDDELEPIVVVSKN-----TQGKHMLLASGGGQHAIFLVKADKQDQK 423
            :           |:.:.|        :.:::|     ||       .|.|....:..:..|..:|
Human   425 SSLKQCRWAYPRQVFISD--------IALNRNEILFVTQ-------DGEGFRGRWFEEKRKSSEK 474

  Fly   424 ENVPVKVSGSSS 435
            :.:...:..|||
Human   475 KEILSNLHNSSS 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcc1NP_523943.1 RCC1 42..89 CDD:278826
RCC1 92..141 CDD:278826 15/56 (27%)
RCC1_2 131..158 CDD:290274 6/26 (23%)
RCC1 144..193 CDD:278826 15/53 (28%)
RCC1_2 182..209 CDD:290274 10/26 (38%)
RCC1 363..414 CDD:278826 12/66 (18%)
IBTKXP_006715516.1 ANK 25..135 CDD:238125
Ank_2 25..116 CDD:289560
ANK repeat 51..82 CDD:293786
ANK repeat 84..116 CDD:293786
RCC1 143..192 CDD:278826 15/54 (28%)
RCC1 195..244 CDD:278826 15/53 (28%)
ATS1 227..>458 CDD:227511 57/273 (21%)
RCC1 247..299 CDD:278826 13/51 (25%)
BTB 554..>642 CDD:279045
BTB 565..>639 CDD:197585
BTB 761..867 CDD:279045
BTB 769..867 CDD:197585
SPOP_C_like 871..931 CDD:269810
GVQW 1248..>1284 CDD:290611
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.