DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rcc1 and Nek9

DIOPT Version :9

Sequence 1:NP_523943.1 Gene:Rcc1 / 38669 FlyBaseID:FBgn0002638 Length:547 Species:Drosophila melanogaster
Sequence 2:NP_660120.2 Gene:Nek9 / 217718 MGIID:2387995 Length:984 Species:Mus musculus


Alignment Length:607 Identity:136/607 - (22%)
Similarity:233/607 - (38%) Gaps:157/607 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 KRARIAFHLELP----KRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISAGGM 84
            ||.|.:...|.|    ..||  ..|.|.|.|.          ...::|..:.....|..:.||..
Mouse   327 KRPRSSTVTEAPIAVVTSRT--SEVYVWGGGK----------STPQKLDVIKSGCSARQVCAGNT 379

  Fly    85 HNLVLTKSGDIYSF-----GCNDEGALGRDTSEDGSESKPDLID-LPGKAL-CISAGDSHSACLL 142
            |..|:|...::|::     |....|.||.  .:..|..:|..:: |.|||: .:|.||..:.|:.
Mouse   380 HFAVVTVEKELYTWVNMQGGTKLHGQLGH--GDKASYRQPKHVEKLQGKAIHQVSCGDDFTVCVT 442

  Fly   143 EDGRVFAWGSFRDSHGNMGL-TIDGNK-----------RTPIDLMEGTVCCSIASGADHLVILTT 195
            ::|:::|:||  |.:|.||: .:.|.:           ..|::        .::.|.:|:|:||.
Mouse   443 DEGQLYAFGS--DYYGCMGVDKVSGPEVLEPMQLNFFLSNPVE--------QVSCGDNHVVVLTR 497

  Fly   196 AGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQT 260
            ..:|::.||.|.|:||..||           .|...|.::.:.:|....|:......||:. :|:
Mouse   498 NKEVYSWGCGEYGRLGLDSE-----------EDYYTPQRVDVPKALIIVAVQCGCDGTFLL-TQS 550

  Fly   261 QVIWATGLNNFKQLA--------------HE-------TKGKEFALTPIKTELKDIRHIAGGQHH 304
            ..:.|.|||.|.:|.              ||       |..|:.:...|:|       ||.|:.|
Mouse   551 GKVLACGLNEFNKLGLNQCMSGIINHEAYHEVPYTTSFTLAKQLSFYKIRT-------IAPGKTH 608

  Fly   305 TVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKL----------TEKIVSVGCGEVCSYA 359
            |..:....:....|..:.|:||:|:.|         |:|          .::::.|.||:..:.|
Mouse   609 TAAIDERGRLLTFGCNKCGQLGVGNYK---------KRLGINLLGGPLGGKQVIRVSCGDEFTIA 664

  Fly   360 VTIDGKLYSWGSGVNNQLGV-----GDGDDEL----EPIVVVSKNTQGK--HMLLASGGGQHAIF 413
            .|.|..:::||:|.|.:|.:     ..|.|..    .||.       |.  |:...|..|.|.|.
Mouse   665 ATDDNHIFAWGNGGNGRLAMTPTERPHGSDICTSWPRPIF-------GSLHHVPDLSCRGWHTIL 722

  Fly   414 LVKADKQDQKENVPVKVSGSSSISKKDKTPPQDNV--------DKEAENVDKQEQKE-------- 462
            :|  :|....:.:....||.|..:....:.|...:        ....|..|.|::.|        
Mouse   723 IV--EKVLNSKTIRSNSSGLSIGTVVQSSSPGGGIGGGGGGGGGGGGEEEDSQQESETPDPSGGF 785

  Fly   463 --NLPAKASTSSKKNKTPPQDNA-----------DKEAENVDKQEQKEN-LPAKASTSSKKIKTP 513
              .:.|........:.|....|:           .||.||.:.....:: .|..|:.|..:..|.
Mouse   786 RGTMEADRGMEGLISPTEAVGNSCGASSSCPGWLRKELENAEFIPMPDSPAPLSAAFSQSEKDTL 850

  Fly   514 PQDDAAEEVEEESAQEPTPKKA 535
            |.:: .:.::..|...|.|::|
Mouse   851 PYEE-LQGLKVASEVPPEPQRA 871

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcc1NP_523943.1 RCC1 42..89 CDD:278826 9/46 (20%)
RCC1 92..141 CDD:278826 14/55 (25%)
RCC1_2 131..158 CDD:290274 9/26 (35%)
RCC1 144..193 CDD:278826 13/60 (22%)
RCC1_2 182..209 CDD:290274 9/26 (35%)
RCC1 363..414 CDD:278826 16/61 (26%)
Nek9NP_660120.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 14..43
STKc_Nek9 51..296 CDD:270860
S_TKc 52..296 CDD:214567
RCC1 1 388..444 15/57 (26%)
RCC1 389..441 CDD:278826 14/53 (26%)
RCC1 444..495 CDD:278826 13/60 (22%)
RCC1 2 445..498 15/62 (24%)
RCC1 3 499..550 15/62 (24%)
RCC1 500..547 CDD:278826 15/57 (26%)
RCC1 4 551..615 17/70 (24%)
RCC1 5 616..668 13/60 (22%)
RCC1 616..664 CDD:278826 11/56 (20%)
RCC1 6 669..726 16/65 (25%)
Interaction with NEK6. /evidence=ECO:0000250 732..896 24/141 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 744..790 5/45 (11%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 940..984
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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