Protein Alignment Rcc1 and glo-4

DIOPT Version :9

• Sequence 1: NP_523943.1
• Gene: Rcc1 / 38669
• FlyBaseID: FBgn0002638
• Length: 547
• Species: Drosophila melanogaster
• Sequence 2: NP_505392.3
• Gene: glo-4 / 179306
• WormBaseID: WBGene00017195
• Length: 1386
• Species: Caenorhabditis elegans
• Alignment Length: 502
• Identity: 135/502 - (26%)
• Similarity: 199/502 - (39%)
• Gaps: 100/502 - (19%)

  Fly    72 GIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTS--------EDGSESKPDLIDLPG-- 126
            |.|.|  |:.|..|.|||:.||.:.::|.|..|..|...|        .||        |.|.
 Worm   770 GRPRA--IACGAEHILVLSSSGQLSAWGGNRFGQCGVGHSFRIANLHQVDG--------DWPAIE 824

  Fly   127 KALCISAGDSHSACLLEDGRV--FAWGSFRD-SHGNMGLTIDGNKRTPIDLMEGTVC--CSIASG 186
            |..|   |..|||.:..||.:  |.||.:.. .||...   :.|:..| ..:.|.:|  ..||.|
 Worm   825 KIAC---GQFHSAFICSDGSLWTFGWGVWGQLGHGGRN---NSNQLVP-TRVNGLICKVTQIACG 882

  Fly   187 ADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNY 251
            ..|.|:||..|:|...|....||:|      :..:.:  |.....|..|...|.:..    ||:|
 Worm   883 RAHTVVLTDTGRVLVCGSGSYGQMG------VDDDIK--KVFAFTPLPLGPLRVRDI----ATHY 935

  Fly   252 CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKT-ELKDIRHIAGGQHHTVILTTDLKCS 315
            ...:..::...::..|.|     ..|.|.:.|.:..|:: :||:....:.....|...|..:..:
 Worm   936 YHSICITEDNRVFEWGRN-----PQELKMRMFVMKKIRSAQLKNTEDPSSPSPSTNGSTPRVNLN 995

  Fly   316 VVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVG 380
            :........|||.:||..         |...||||.||...|..:|.:|.||:||.|::.|||.|
 Worm   996 LPAEIPREDLGLREVKHF---------LDGNIVSVACGLSHSALITSEGTLYTWGKGLDYQLGHG 1051

  Fly   381 DGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKAD--------KQDQKE-NVPVKVSGSSS- 435
            :.::.:||..|...|  |...:..|.|..|.|  ...|        |.|..: .|..|.:|:|:
 Worm  1052 NKNERMEPHQVFEPN--GAKWVNVSLGNNHTI--ASTDDGSVFAWGKNDFGQCGVLTKKNGNSAD 1112

  Fly   436 ISKKDKTPPQD------NVDKEAENVDKQEQKENLPAKASTSSKKNKTPPQDNADKEAENVDKQE 494
            ::||.....:|      ||| |::.|.|       |........:|.     |.|.. |.|||:|
 Worm  1113 VTKKFFFQARDGRRFMPNVD-ESQFVQK-------PGLIPDVRVRNL-----NEDGN-EGVDKEE 1163

  Fly   495 QKENLPAK----ASTSSKKIKTPPQDDAAEEVEEESAQEPTPKKAKK 537
            ..:.|.|.    ....||.:.:|.:......:.|:   ||...|.:|
 Worm  1164 IVDRLKASDVNVVQAVSKHLYSPIEGKCNGSIIED---EPRNGKIQK 1207

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rcc1	NP_523943.1	RCC1	42..89	CDD:278826	7/16 (44%)
		RCC1	92..141	CDD:278826	17/58 (29%)
		RCC1_2	131..158	CDD:290274	9/29 (31%)
		RCC1	144..193	CDD:278826	16/53 (30%)
		RCC1_2	182..209	CDD:290274	10/26 (38%)
		RCC1	363..414	CDD:278826	19/50 (38%)
glo-4	NP_505392.3	RCC1_2	773..801	CDD:290274	11/29 (38%)
		RCC1_2	823..852	CDD:290274	11/31 (35%)
		RCC1	839..889	CDD:278826	16/53 (30%)
		RCC1_2	876..905	CDD:290274	10/28 (36%)
		RCC1	893..941	CDD:278826	13/59 (22%)
		RCC1_2	1018..1047	CDD:290274	14/28 (50%)
		RCC1	1034..1082	CDD:278826	19/51 (37%)
		RCC1_2	1070..1099	CDD:290274	7/30 (23%)
		VAD1-2	1303..>1371	CDD:291956

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5184
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1062377at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	2.820