DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rcc1 and Nek8

DIOPT Version :9

Sequence 1:NP_523943.1 Gene:Rcc1 / 38669 FlyBaseID:FBgn0002638 Length:547 Species:Drosophila melanogaster
Sequence 2:XP_006532246.1 Gene:Nek8 / 140859 MGIID:1890646 Length:702 Species:Mus musculus


Alignment Length:372 Identity:90/372 - (24%)
Similarity:157/372 - (42%) Gaps:65/372 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 DAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALC--------- 130
            :.|.::||......:|:||.:..:.....||       .|....|..::||.....         
Mouse   339 EVVQVAAGRTQKAGVTRSGRLILWEAPPLGA-------GGGTLLPGAVELPQPQFVSRFLEGQSG 396

  Fly   131 -----ISAGDSHSACLLEDGRVFAWGSFRD---SHGNMGLTIDGNKRTPIDLMEGTVCCSIASGA 187
                 ::.||..:|||.:.|.:..:||..:   .|||:   .|.::.|.::.:.|.....:|.||
Mouse   397 VTIKHVACGDLFTACLTDRGIIMTFGSGSNGCLGHGNL---TDISQPTIVEALLGYEMVQVACGA 458

  Fly   188 DHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYC 252
            .|::.|:|.|::|..|..:.|:||.         |.|...:.  |.|:.:...:..:.:......
Mouse   459 SHVLALSTDGELFAWGRGDGGRLGL---------GTRESHNC--PQQVPVAPGQEAQRVVCGIDS 512

  Fly   253 TFMRESQTQVIWATGLNNFKQLA--HETKGKE----------FALTPIKT---ELKDIRHIAGGQ 302
            :.:..|..:|: |.|.|.|.:|.  |.:..:|          .:.||:.:   :.:.:..:..|.
Mouse   513 SMILTSPGRVL-ACGSNRFNKLGLDHLSLDEEPVPYQQVEEALSFTPLGSAPLDQEPLLCVDLGT 576

  Fly   303 HHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKL 366
            .|:..:|....|...|..::|:||... :.|...|..|:.|.. |:|.|.||:..:.||..:|::
Mouse   577 AHSAAITASGDCYTFGSNQHGQLGTSS-RRVSRAPCRVQGLEGIKMVMVACGDAFTVAVGAEGEV 640

  Fly   367 YSWGSGVNNQLGVGDGD---------DELEPIVVVSKNTQGKHMLLA 404
            ||||.|...:||..|.|         ||..|.:|.|.:....:.|||
Mouse   641 YSWGKGTRGRLGRRDEDAGLPRPVQLDETHPYMVTSVSCCHGNTLLA 687

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcc1NP_523943.1 RCC1 42..89 CDD:278826 3/13 (23%)
RCC1 92..141 CDD:278826 11/62 (18%)
RCC1_2 131..158 CDD:290274 8/29 (28%)
RCC1 144..193 CDD:278826 13/51 (25%)
RCC1_2 182..209 CDD:290274 9/26 (35%)
RCC1 363..414 CDD:278826 18/51 (35%)
Nek8XP_006532246.1 STKc_Nek8 3..258 CDD:270859
ATS1 318..663 CDD:227511 82/346 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.