DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rcc1 and HERC2

DIOPT Version :10

Sequence 1:NP_523943.1 Gene:Rcc1 / 38669 FlyBaseID:FBgn0002638 Length:547 Species:Drosophila melanogaster
Sequence 2:XP_061516765.1 Gene:HERC2 / 1280824 VectorBaseID:AGAMI1_012955 Length:5199 Species:Anopheles gambiae


Alignment Length:463 Identity:123/463 - (26%)
Similarity:184/463 - (39%) Gaps:96/463 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 TNNNNAGEAEQQPPKAKRARIAFHLE------LPK----------RR------------TVLGNV 44
            |....||.:|..|..|..:.:..:|.      .|:          ||            |:.|  
Mosquito  4279 TTTITAGSSESLPVNATGSEVTKYLHEDHAYFTPQYDSQLLQWFNRRPEDWAFSWGGASTIFG-- 4341

  Fly    45 LVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDIS-AGGMHNL-VLTKSGDIYSFGCNDEGALG 107
              .|:...|||| |.|....|..:|...:.....|. |||...| .:|..|.:|:.|....|.||
Mosquito  4342 --WGHNHRGQLG-GLDGSRIKNPTPCEALSLLRPIQIAGGEQTLYAVTPDGKLYATGYGAGGRLG 4403

  Fly   108 RDTSEDGSESKPDLID----LPGKALCISAGDSHSACLLEDGRVFAWGSFRD---SHGNMGLTID 165
            ...::  |.:.|.|::    :..|.:.:::|..|...|..||.||:||...|   .|||.    |
Mosquito  4404 VGGTD--SVTTPTLVESLQHVMIKKVAVNSGGKHCLALSSDGEVFSWGEGEDGKLGHGNR----D 4462

  Fly   166 GNKRTP-IDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDL 229
            ...|.. |:.:.|.....||.|:.|...:|..|.|.|.|   :|:.|||        |.....|.
Mosquito  4463 SYDRPKLIESLSGIGVVDIACGSAHSACITIQGHVLTWG---KGRYGRL--------GHGDSEDQ 4516

  Fly   230 LRPTQLIITRAKPFEAIW---ATNYCTFMRESQTQVI------WATGLNNFKQLAHETKGKEFAL 285
            |:|        |..||:.   |.:......::||..|      |:.|..::.:|..  .|.:...
Mosquito  4517 LQP--------KLVEALLGYRAIDIACGSGDAQTLCITDDDNVWSWGDGDYGKLGR--GGSDGCK 4571

  Fly   286 TPIKTELKDIRHIAG--------GQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKK 342
            .|:|     |..:||        |...:|.||........|:.:|.|||.|:. |.|.:|..|..
Mosquito  4572 VPMK-----IESLAGLGVTKVECGSQFSVALTRSGSVYTWGKGDYHRLGHGNT-DHVRRPKKVAA 4630

  Fly   343 LT-EKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASG 406
            |. :||:|:..|.:...|.:..|::::||.....|||.|.......|.:|  ::.||||::....
Mosquito  4631 LQGKKIISIATGSLHCVACSDAGEVFTWGDNDEGQLGDGTVSAIQRPRLV--QSLQGKHIVKVIC 4693

  Fly   407 GGQHAIFL 414
            |..|.:.|
Mosquito  4694 GSAHTLAL 4701

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcc1NP_523943.1 ATS1 42..389 CDD:444065 103/374 (28%)
Borrelia_P83 <419..>508 CDD:114011
HERC2XP_061516765.1 None
Blue background indicates that the domain is not in the aligned region.

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