DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rcc1 and LOC1279354

DIOPT Version :10

Sequence 1:NP_523943.1 Gene:Rcc1 / 38669 FlyBaseID:FBgn0002638 Length:547 Species:Drosophila melanogaster
Sequence 2:XP_061517872.1 Gene:LOC1279354 / 1279354 VectorBaseID:AGAMI1_010527 Length:1294 Species:Anopheles gambiae


Alignment Length:427 Identity:102/427 - (23%)
Similarity:161/427 - (37%) Gaps:115/427 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 NNNNAGEAEQQPPKAKRARIAFHLELPKRRTV-----LGNVLVCGNGDVGQLGLG-EDILERKRL 67
            |..:.|..|......|.......||:....:|     :|.:...|:|..|:|||| ||.:.....
Mosquito   168 NAQDKGNPESMEYFRKTRTTIRKLEISSYHSVFLTHKMGELYAAGHGVGGRLGLGMEDTIAYPMK 232

  Fly    68 SPVAGIPD---AVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLI---DLPG 126
            .||. :.|   ..||:|...|.|:||.:..|||.|.|....||.........|..::.   .|.|
Mosquito   233 VPVP-LRDNERITDIAAAKHHTLILTDNNHIYSCGENKHCQLGLKPPPANLLSFKEITGHSSLSG 296

  Fly   127 KAL-CISAGDSHSACLLEDGRVFAW----GSF---RDSHGNM--------------GLTIDGN-- 167
            |.: .:.|.|.||..:|| ..::.|    |.|   |||..:|              .|..||:  
Mosquito   297 KTIKRVIAMDYHSIAVLE-ADIYVWGLNGGQFGLKRDSRSDMIVLPKPIPLIPEGTMLKDDGSAI 360

  Fly   168 KR-TPIDLMEGTVCCSIASGADHLVILTTAGKV-----FTVGCAEQGQLGRLSERSIS-GEGRRG 225
            || |.|.|:|.      ::||  :|:.|....:     |.|...::..:.::...|:: ||.:..
Mosquito   361 KRDTTIKLIES------SNGA--IVVYTMKNFLHIFSGFKVKTYKKPLMEKIECLSVAGGELQTE 417

  Fly   226 KRDLLRPT----QLIITRAKPFEAIWATN-----YCTFMRE-----------SQTQVIWATG--- 267
            :.|:::.:    .|:.|.::.. .||..:     .|.|.:.           ||..::...|   
Mosquito   418 QEDVVKRSGDLRVLVFTTSRNI-YIWYEDCQQFVRCVFAQSRNLEVEKIRWCSQNALVLLLGNLY 481

  Fly   268 ------------LNNFKQLAHETKGKEFALT-PIKTELKDIRHI---------AGGQHHTVILTT 310
                        .:.|.:.......||...| ..:.||:.||::         |.|:::..::..
Mosquito   482 QGIITNKLPRSAKHQFSEFKETCTRKELCETMQSRIELRRIRNLCNVVDFACDADGENYAALVEN 546

  Fly   311 DLKCSVVGRPE-------YGRLGLGD------VKDVV 334
            ..:|..|  ||       ||.| |.|      |.|||
Mosquito   547 TRRCFCV--PELVESNYDYGTL-LADTTEMDGVHDVV 580

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcc1NP_523943.1 ATS1 42..389 CDD:444065 95/389 (24%)
Borrelia_P83 <419..>508 CDD:114011
LOC1279354XP_061517872.1 None
Blue background indicates that the domain is not in the aligned region.

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