DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rcc1 and RCC1

DIOPT Version :9

Sequence 1:NP_523943.1 Gene:Rcc1 / 38669 FlyBaseID:FBgn0002638 Length:547 Species:Drosophila melanogaster
Sequence 2:NP_001041659.1 Gene:RCC1 / 1104 HGNCID:1913 Length:452 Species:Homo sapiens


Alignment Length:445 Identity:180/445 - (40%)
Similarity:255/445 - (57%) Gaps:36/445 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPRRKALTNNNNA------------GEAEQQPPKAKRARIAFHLELPKRRTVLGNVLVCGNGDVG 53
            :|:.|.:.:...|            |.....||..|...::..    ...|..|.||..|.||||
Human    17 IPKSKKVKDTRAAASRRVPGARSCQGACGPSPPDQKTRPVSHR----SHSTEPGLVLTLGQGDVG 77

  Fly    54 QLGLGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESK 118
            ||||||:::|||:.:.|:...|.|...|||||.:.|:|||.:||||||||||||||||.:|||..
Human    78 QLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMV 142

  Fly   119 PDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRT--PIDLMEGTVCC 181
            |..::|..|.:.:||||||:|.|.:|||||.||||||::|.:|| ::..|::  |:.:.......
Human   143 PGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGL-LEPMKKSMVPVQVQLDVPVV 206

  Fly   182 SIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAK----- 241
            .:|||.||||:||..|.::|:||.|||||||:.|...:..||:|...||.| :.::.:::     
Human   207 KVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVP-KCVMLKSRGSRGH 270

  Fly   242 -PFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFA-----LTPIKTELKDIRHIAG 300
             .|:..:...|.||....:..| :..||:|:.||.  |.|.|..     ||..|...|.....:|
Human   271 VRFQDAFCGAYFTFAISHEGHV-YGFGLSNYHQLG--TPGTESCFIPQNLTSFKNSTKSWVGFSG 332

  Fly   301 GQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGK 365
            ||||||.:.::.|...:||.||||||||:..:....||::.:| ..:.||.||....||||.||:
Human   333 GQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL-PAVSSVACGASVGYAVTKDGR 396

  Fly   366 LYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKADKQ 420
            :::||.|.|.|||.|..:|...|:.::.|..:.:.:|..|.||||.:.||| ||:
Human   397 VFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVK-DKE 450

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcc1NP_523943.1 RCC1 42..89 CDD:278826 25/46 (54%)
RCC1 92..141 CDD:278826 31/48 (65%)
RCC1_2 131..158 CDD:290274 19/26 (73%)
RCC1 144..193 CDD:278826 23/50 (46%)
RCC1_2 182..209 CDD:290274 15/26 (58%)
RCC1 363..414 CDD:278826 19/50 (38%)
RCC1NP_001041659.1 RCC1 66..113 CDD:278826 25/46 (54%)
RCC1 116..165 CDD:278826 31/48 (65%)
RCC1 168..218 CDD:278826 23/50 (46%)
RCC1 221..286 CDD:278826 22/65 (34%)
RCC1 289..340 CDD:278826 20/53 (38%)
RCC1 343..386 CDD:278826 18/43 (42%)
RCC1 394..445 CDD:278826 19/50 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165143329
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H55567
Inparanoid 1 1.050 308 1.000 Inparanoid score I2623
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG58672
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 1 1.000 - - FOG0004765
OrthoInspector 1 1.000 - - oto90454
orthoMCL 1 0.900 - - OOG6_100545
Panther 1 1.100 - - LDO PTHR45982
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1072
SonicParanoid 1 1.000 - - X2826
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1615.800

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