DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rcc1 and Rcbtb2

DIOPT Version :9

Sequence 1:NP_523943.1 Gene:Rcc1 / 38669 FlyBaseID:FBgn0002638 Length:547 Species:Drosophila melanogaster
Sequence 2:NP_001164165.1 Gene:Rcbtb2 / 105670 MGIID:1917200 Length:551 Species:Mus musculus


Alignment Length:341 Identity:82/341 - (24%)
Similarity:131/341 - (38%) Gaps:76/341 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 TVLGNVLVCGNGDVGQLGLG--EDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCN 101
            ||...:.|.|....|.||:|  :..:|.:||..:.|...|......|.|.::.|..|:::::|.|
Mouse    62 TVNDEIFVLGTNCSGCLGVGDIQSTIEPRRLDSLTGKKIASLSYGSGPHIVLATTDGEVFTWGHN 126

  Fly   102 DEGALGRDTSEDGSESKPDLIDLPGKALC-ISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTID 165
            ....||..|:..|........:|..|.:. ::.|..||..|..||.|||||  .::.|.:|....
Mouse   127 AYSQLGNGTTNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWG--YNNSGQVGSGST 189

  Fly   166 GNKRTP---IDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKR 227
            .|:..|   ...::..|..:||.|....:.:...|:|:..|....||||.         |..|. 
Mouse   190 ANQPIPRRVTGCLQNKVVMNIACGQMCSMAVVDTGEVYVWGYNGNGQLGL---------GSSGN- 244

  Fly   228 DLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTEL 292
               :||...:.                                             ||..|:   
Mouse   245 ---QPTPCRVA---------------------------------------------ALQGIR--- 258

  Fly   293 KDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKD-VVEKPTIVKKLTEKIVSV-GCGEV 355
              ::.:|.|..||::||.:.:....|...||:||.|:..: ....|.:|:|  ::|:.: .|...
Mouse   259 --VQRVACGYAHTLVLTDEGQIYAWGANSYGQLGTGNKSNQSYPTPVVVEK--DRIIEIAACHSA 319

  Fly   356 -CSYAVTIDGKLYSWG 370
             .|.|.|..|.:|.||
Mouse   320 HTSAAKTQGGHVYMWG 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcc1NP_523943.1 RCC1 42..89 CDD:278826 13/48 (27%)
RCC1 92..141 CDD:278826 12/49 (24%)
RCC1_2 131..158 CDD:290274 11/26 (42%)
RCC1 144..193 CDD:278826 15/51 (29%)
RCC1_2 182..209 CDD:290274 6/26 (23%)
RCC1 363..414 CDD:278826 4/8 (50%)
Rcbtb2NP_001164165.1 RCC1 1. /evidence=ECO:0000255 64..115 13/50 (26%)
ATS1 <107..335 CDD:227511 67/294 (23%)
RCC1 2. /evidence=ECO:0000255 117..169 13/51 (25%)
RCC1 3. /evidence=ECO:0000255 171..222 14/52 (27%)
RCC1 4. /evidence=ECO:0000255 223..274 19/113 (17%)
RCC1 5. /evidence=ECO:0000255 276..326 13/51 (25%)
RCC1 6. /evidence=ECO:0000255 328..382 4/8 (50%)
BTB_POZ_RCBTB2_CHC1L 374..490 CDD:349663
BACK_RCBTB2 487..551 CDD:350604
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167833500
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.840

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