DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rcc1 and Rcbtb2

DIOPT Version :10

Sequence 1:NP_523943.1 Gene:Rcc1 / 38669 FlyBaseID:FBgn0002638 Length:547 Species:Drosophila melanogaster
Sequence 2:NP_598844.3 Gene:Rcbtb2 / 105670 MGIID:1917200 Length:551 Species:Mus musculus


Alignment Length:341 Identity:82/341 - (24%)
Similarity:131/341 - (38%) Gaps:76/341 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 TVLGNVLVCGNGDVGQLGLG--EDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCN 101
            ||...:.|.|....|.||:|  :..:|.:||..:.|...|......|.|.::.|..|:::::|.|
Mouse    62 TVNDEIFVLGTNCSGCLGVGDIQSTIEPRRLDSLTGKKIASLSYGSGPHIVLATTDGEVFTWGHN 126

  Fly   102 DEGALGRDTSEDGSESKPDLIDLPGKALC-ISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTID 165
            ....||..|:..|........:|..|.:. ::.|..||..|..||.|||||  .::.|.:|....
Mouse   127 AYSQLGNGTTNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWG--YNNSGQVGSGST 189

  Fly   166 GNKRTP---IDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKR 227
            .|:..|   ...::..|..:||.|....:.:...|:|:..|....||||.         |..|. 
Mouse   190 ANQPIPRRVTGCLQNKVVMNIACGQMCSMAVVDTGEVYVWGYNGNGQLGL---------GSSGN- 244

  Fly   228 DLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTEL 292
               :||...:.                                             ||..|:   
Mouse   245 ---QPTPCRVA---------------------------------------------ALQGIR--- 258

  Fly   293 KDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKD-VVEKPTIVKKLTEKIVSV-GCGEV 355
              ::.:|.|..||::||.:.:....|...||:||.|:..: ....|.:|:|  ::|:.: .|...
Mouse   259 --VQRVACGYAHTLVLTDEGQIYAWGANSYGQLGTGNKSNQSYPTPVVVEK--DRIIEIAACHSA 319

  Fly   356 -CSYAVTIDGKLYSWG 370
             .|.|.|..|.:|.||
Mouse   320 HTSAAKTQGGHVYMWG 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcc1NP_523943.1 ATS1 42..389 CDD:444065 80/338 (24%)
Borrelia_P83 <419..>508 CDD:114011
Rcbtb2NP_598844.3 RCC1 1. /evidence=ECO:0000255 64..115 13/50 (26%)
ATS1 <71..335 CDD:444065 77/330 (23%)
RCC1 2. /evidence=ECO:0000255 117..169 13/51 (25%)
RCC1 3. /evidence=ECO:0000255 171..222 14/52 (27%)
RCC1 4. /evidence=ECO:0000255 223..274 19/113 (17%)
RCC1 5. /evidence=ECO:0000255 276..326 13/51 (25%)
RCC1 6. /evidence=ECO:0000255 328..382 4/8 (50%)
BTB_POZ_RCBTB2_CHC1L 374..490 CDD:349663
BACK_RCBTB2 487..551 CDD:350604
Blue background indicates that the domain is not in the aligned region.

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