DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rcc1 and rcc2

DIOPT Version :9

Sequence 1:NP_523943.1 Gene:Rcc1 / 38669 FlyBaseID:FBgn0002638 Length:547 Species:Drosophila melanogaster
Sequence 2:XP_031761501.1 Gene:rcc2 / 100494942 XenbaseID:XB-GENE-996297 Length:513 Species:Xenopus tropicalis


Alignment Length:498 Identity:117/498 - (23%)
Similarity:188/498 - (37%) Gaps:132/498 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 NNNNAGEAEQQPPKAKRARIAFHLELPKRRTVL------GNVLVCG--NGD-VGQ---------- 54
            |||..|.| :...||..|.|....|..|.:..|      |.:|:.|  |.| :|:          
 Frog    57 NNNKRGPA-KGAAKAPTAVIVTEPEHSKEKIKLEGSKAKGQLLIFGATNWDLIGRKEVPKQQAAY 120

  Fly    55 LGLGEDILERKRLSPVAGIPDAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSES 117
            ..||:::....|...:.|: ....::||  ..|:|::|..|.::|:|.||:|.||.     |...
 Frog   121 RNLGQNLWGPHRYGCLTGV-QVRTVAAGPCAAHSLLITVEGKLWSWGRNDKGQLGH-----GDVK 179

  Fly   118 K---PDLID-LPGKALCISA-GDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPID---- 173
            :   |.||: |.|:.....| |.:|:..|.|:|.|:|:|  .:..|.:||   |||...:.    
 Frog   180 RIDVPKLIESLKGEVFVHGACGRNHTLALTENGSVYAFG--ENKMGQLGL---GNKTDAVPSPAQ 239

  Fly   174 -LMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLII 237
             |..|.....:|.||:..:|:...|.:::.||.|.||||..|:.......:|.:.|    .:||.
 Frog   240 ILYNGQPITKVACGAEFSMIMDCKGNLYSFGCPEYGQLGHNSDGKYIARAQRIEYD----CELIA 300

  Fly   238 TRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQ 302
            .|...|                                 ..|.|:..:.|:...:  :|.||.|.
 Frog   301 RRIAIF---------------------------------IEKTKDGQVLPVPNVV--VRDIACGI 330

  Fly   303 HHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLT---EKIVSVGCGEVCSYAVTIDG 364
            :|:::|.:..:....|...|||||..:.:|.: .|.:||...   .....:..|..||:||:..|
 Frog   331 NHSLVLDSQKRVFSWGFGGYGRLGHSEQRDEM-VPRLVKLFDFPGRGASQIYAGATCSFAVSEMG 394

  Fly   365 KLYSWGS--------------------GVNN--------------------------QLGVGDGD 383
            .|:.||:                    .|.|                          :||.||..
 Frog   395 GLFFWGATNTSRDSTMYPKTVQDLCGWKVRNLACGKSSIILAADESTISWGPSPTFGELGYGDNK 459

  Fly   384 DELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKADKQDQKENV 426
            .:........|...|.:......|..|.:.:.:.:.:..||.:
 Frog   460 AKSSTTAQEVKTLDGIYSDQVCMGYSHTLVVARDETEQDKEKL 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rcc1NP_523943.1 RCC1 42..89 CDD:278826 14/61 (23%)
RCC1 92..141 CDD:278826 17/53 (32%)
RCC1_2 131..158 CDD:290274 9/27 (33%)
RCC1 144..193 CDD:278826 15/53 (28%)
RCC1_2 182..209 CDD:290274 8/26 (31%)
RCC1 363..414 CDD:278826 14/96 (15%)
rcc2XP_031761501.1 ATS1 122..472 CDD:227511 94/400 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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