Protein Alignment Rcc1 and herc1

DIOPT Version :9

• Sequence 1: NP_523943.1
• Gene: Rcc1 / 38669
• FlyBaseID: FBgn0002638
• Length: 547
• Species: Drosophila melanogaster
• Sequence 2: XP_017947876.1
• Gene: herc1 / 100493988
• XenbaseID: XB-GENE-1002062
• Length: 4854
• Species: Xenopus tropicalis
• Alignment Length: 417
• Identity: 100/417 - (23%)
• Similarity: 170/417 - (40%)
• Gaps: 90/417 - (21%)

  Fly    42 GNVLVCGNGDVGQLGLG--EDILERKRLSPVAG--IPDAVDISAGGMHNLVLTKSGDIYSFGCND 102
            |.||.||.|..|:||.|  :|:.....:|.:.|  :...|.......|::.||:||:::|:|..|
 Frog  4039 GTVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGDGD 4103

  Fly   103 EGALGRDTSEDGSESKPDLID-LPGKALC-ISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTID 165
            .|.||...|:  .:.:|..|: |.|:.:. :|.|..|||.:..||::|.:|:  ..:|.:||...
 Frog  4104 YGKLGHGNSD--RQRRPRQIEALQGEEVVQMSCGFKHSAVVTADGKLFTFGN--GDYGRLGLGNT 4164

  Fly   166 GNKRTP--IDLMEGTVCCSIASGADHLVILTTAGK-VFTVGCAEQGQLGRLSERSISGEGRRGKR 227
            .||:.|  :..:||.....:|.|.:|.:.::..|. |:..|..:.|:||..:..:
 Frog  4165 SNKKLPERVTALEGLHIGQVACGLNHTLAVSADGSLVWAFGDGDYGKLGLGNSTA---------- 4219

  Fly   228 DLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTEL 292
                       ::.|               .:..|:...|
 Frog  4220 -----------KSSP---------------QKVDVLCGIG------------------------- 4233

  Fly   293 KDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIV-SVGCGEVC 356
              |:.:|.|...:|.||.|......|:.....|..|..:: ..:|.:|..|....: .:..|...
 Frog  4234 --IKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRARN-HNRPQLVPVLLGIFIDDIAVGAEH 4295

  Fly   357 SYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKADKQD 421
            :.|::..|::|:|||....|||:|..:...||.:|.:  .|||::...|.|..|:.....|.
 Frog  4296 TLALSASGEVYAWGSNSEGQLGLGHTNHVREPTLVTA--LQGKNIRQISAGRCHSAAWTAAP--- 4355

  Fly   422 QKENVPVKVSGSS---SISKKDKTPPQ 445
                ||.:..|.:   .:...|..|||
 Frog  4356 ----VPPRAPGVAVPLQLGLPDVIPPQ 4378

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rcc1	NP_523943.1	RCC1	42..89	CDD:278826	15/50 (30%)
		RCC1	92..141	CDD:278826	18/50 (36%)
		RCC1_2	131..158	CDD:290274	9/26 (35%)
		RCC1	144..193	CDD:278826	15/50 (30%)
		RCC1_2	182..209	CDD:290274	6/27 (22%)
		RCC1	363..414	CDD:278826	18/50 (36%)
herc1	XP_017947876.1	None

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1062377at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.920