Protein Alignment Rcc1 and herc1

DIOPT Version :10

• Sequence 1: NP_523943.1
• Gene: Rcc1 / 38669
• FlyBaseID: FBgn0002638
• Length: 547
• Species: Drosophila melanogaster
• Sequence 2: XP_017947876.1
• Gene: herc1 / 100493988
• XenbaseID: XB-GENE-1002062
• Length: 4854
• Species: Xenopus tropicalis
• Alignment Length: 204
• Identity: 43/204 - (21%)
• Similarity: 65/204 - (31%)
• Gaps: 51/204 - (25%)

  Fly   310 EELDKVIERLRVPSEYAASLTGGSFDEADMLQNIEAC-EWLAKALRGLEVPNLDPIYANMRAVKE 373
            :|.:||..|......:....||....:..:.....|| .:|||..|         |::.     |
 Frog   513 DECEKVFSRKSSLETHKIGHTGEKPYKCKVCDKAFACHSYLAKHTR---------IHSG-----E 563

  Fly   374 KRAELEKLKATFVRRASEFLRDYFASLVDFKFSDKSY--------FSQRGQL---KRPDHADLRY 427
            |..:..:...||..|:      |..........:|.|        ||:|..|   :|....:..|
 Frog   564 KPYKCNECSKTFSHRS------YLVCHHRVHSGEKPYKCNECSKTFSRRSSLHCHRRLHSGEKPY 622

  Fly   428 KCRTYARLMQHLKGL-NKNCLGPLRKAYCSSL-------NLLLRREAR-----------EFAKEL 473
            ||.......:|...| ....|....|:|..::       |.||.|..|           |..|..
 Frog   623 KCNECGNTFRHCSSLIYHRRLHTGEKSYKCTICDKAFVRNSLLSRHTRIHTAEKPYKCNECGKAF 687

  Fly   474 RASTKVSRN 482
            ...:.:||:
 Frog   688 NQQSHLSRH 696

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rcc1	NP_523943.1	ATS1	42..389	CDD:444065	17/79 (22%)
		Borrelia_P83	<419..>508	CDD:114011	18/83 (22%)
herc1	XP_017947876.1	ATS1	374..703	CDD:444065	43/204 (21%)
		RCC1	683..733	CDD:395335	3/14 (21%)
		SPRY_HERC1	2025..2182	CDD:293939
		UBA_HERC1	2741..2779	CDD:270584
		WD40	3359..3793	CDD:441893
		WD40 repeat	3432..3466	CDD:293791
		WD40 repeat	3471..3513	CDD:293791
		WD40 repeat	3520..3565	CDD:293791
		WD40 repeat	3576..3612	CDD:293791
		WD40 repeat	3620..3646	CDD:293791
		WD40 repeat	3663..3694	CDD:293791
		WD40 repeat	3743..3769	CDD:293791
		WD40 repeat	3785..3819	CDD:293791
		ATS1	4023..4353	CDD:444065
		HECTc	4466..4834	CDD:238033