Protein Alignment Rcc1 and herc3

DIOPT Version :9

• Sequence 1: NP_523943.1
• Gene: Rcc1 / 38669
• FlyBaseID: FBgn0002638
• Length: 547
• Species: Drosophila melanogaster
• Sequence 2: XP_002938676.3
• Gene: herc3 / 100488790
• XenbaseID: XB-GENE-968537
• Length: 1050
• Species: Xenopus tropicalis
• Alignment Length: 461
• Identity: 113/461 - (24%)
• Similarity: 185/461 - (40%)
• Gaps: 121/461 - (26%)

  Fly    42 GNVLVCG-NGDVGQLG---LGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCND 102
            |.|..|| ||: ||||   .|.|.::...|:.    .....|:.|..|||.|:..|.:||:|..:
 Frog    53 GQVYSCGWNGE-GQLGHDHEGTDPVQVTTLTE----EHITHIACGQSHNLALSYQGQLYSWGSGN 112

  Fly   103 EGALGRDTSEDGSESKPDLIDL--PGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTID 165
            :|.||..|.|..|.. |.:|..  ..|...:|.|:.|...|.:||::|.||  ::.||.:||
 Frog   113 DGQLGHATVEHSSRI-PRIIKKLNQQKIQQVSCGNDHCMALGDDGQLFTWG--QNLHGQLGL--- 171

  Fly   166 GN----KRTP--IDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRR 224
            ||    :.:|  :..:||.....:.:|..|...|:.:|.||..|....||||...|:
 Frog   172 GNGFLSQSSPQRVKSLEGIPLAQVTAGGSHSFALSLSGAVFGWGNNSAGQLGLNDEK-------- 228

  Fly   225 GKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIK 289
                                          :||:...|                       .|::
 Frog   229 ------------------------------VRETPCHV-----------------------KPLR 240

  Fly   290 TELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGE 354
            |.  .:.:|:.|:.||.|||........|....|:||...:.:.:....:::.:..::..:.||.
 Frog   241 TH--KVIYISCGEEHTAILTKAGGLFTFGAGGSGQLGHDSLNNEINPRRVLELMGSEVSQIACGR 303

  Fly   355 VCSYA-VTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKAD 418
            ..:.| |...|.||::|.|...|||.|..::...|.||..|        .|:..||.::...:|
 Frog   304 QHTLAFVPSSGTLYAFGCGDLGQLGTGHKNNVKCPAVVKGK--------WAAHSGQISMHADRA- 359

  Fly   419 KQDQKENVPVKV-SGSSS----ISKKDKTPPQDN------------VDKEAENVDKQEQKENLPA 466
                ..|:..:: ||.:.    .||.:.:.|.|:            :::|..:|.:|:..||
 Frog   360 ----AYNIVKQIFSGGNKTFVLCSKLESSQPADDFRFCSQRNHTSVINEETIDVWRQKVLEN--- 417

  Fly   467 KASTSS 472
             ::|:|
 Frog   418 -SNTNS 422

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rcc1	NP_523943.1	RCC1	42..89	CDD:278826	18/50 (36%)
		RCC1	92..141	CDD:278826	16/50 (32%)
		RCC1_2	131..158	CDD:290274	9/26 (35%)
		RCC1	144..193	CDD:278826	16/54 (30%)
		RCC1_2	182..209	CDD:290274	7/26 (27%)
		RCC1	363..414	CDD:278826	16/50 (32%)
herc3	XP_002938676.3	RCC1	3..49	CDD:395335
		ATS1	44..353	CDD:227511	98/381 (26%)
		HECTc	702..1048	CDD:238033

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1062377at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.920