DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5592 and Slc22a4

DIOPT Version :9

Sequence 1:NP_647996.1 Gene:CG5592 / 38662 FlyBaseID:FBgn0035645 Length:540 Species:Drosophila melanogaster
Sequence 2:NP_071606.1 Gene:Slc22a4 / 64037 RGDID:621149 Length:553 Species:Rattus norvegicus


Alignment Length:552 Identity:152/552 - (27%)
Similarity:269/552 - (48%) Gaps:33/552 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 YENFLLFIGDFGPFQKRLLFWMMPAAFL-FAFTYFGQIFMILLPKNHWCRVRELEGLPESEQKNR 72
            |:..:.|:||:|||| ||:|:::.|:.: ..|.....:|:...|: |.|.|.....| .|..:|.
  Rat     4 YDEVIAFLGDWGPFQ-RLIFFLLSASIIPNGFNGMSVVFLAGTPE-HRCLVPHTVNL-SSAWRNH 65

  Fly    73 GIP-KKQDGSF--ENCFMYNVPYDSNATN---------DANQTRSPIPCNNGWIYDRKEVPYESI 125
            .|| :.:||..  ::|..|.:...:|.:.         |..|.... .|.:||.|. |:|...:|
  Rat    66 SIPLETKDGRQVPQSCRRYRLATIANFSALGLEPGLDVDLEQLEQE-SCLDGWEYS-KDVFLSTI 128

  Fly   126 ATEYNWVCDKRDFGT-YSVVVYFVGCIVGCLCFGFITDHSGRLPALFLANSCSMIGGCVSVVCKD 189
            .||:|.||:. |:.| .:..::|||.:.|....|.::|..||...||...:.......|.:...:
  Rat   129 VTEWNLVCED-DWKTPLTTSLFFVGVLCGSFVSGQLSDRFGRKKVLFATMAVQTGFSFVQIFSTN 192

  Fly   190 FPCFAASRFVAGLSMNYCFVPIYILTLENVGIKYRTLVGNLALTFFFTLGACLLPWLAYVISNWR 254
            :..|.....:.|:.....:|..:||..|.:....|.|...|.:..||.:|..:||..||.|.:||
  Rat   193 WEMFTVLFAIVGMGQISNYVVAFILGTEILSKSVRILFSTLGVCTFFAIGYMVLPLFAYFIRDWR 257

  Fly   255 HYAMVVALPIVFMILTSLLAPESPSWLMSVGKVDRCIEVMKEAAKANGKIISEEVWSEMRECYEL 319
            ...:.:.||.:|.:......||||.||:|..:.:...:::::|||.|| |::..|..:..|..||
  Rat   258 MLLLALTLPGLFCVPLWWFIPESPRWLISQRRFEEAEQIIQKAAKMNG-IMAPAVIFDPLELQEL 321

  Fly   320 KFANEQLGKQYTSLDLFKTFPRLVVLTILIVTWMTVALAYDAHVRVVEILDTDIFITFSLSSLVE 384
            ....:|   :...||||||.....:..:.::.||..::.|.|....|..|..|:::...||.|:|
  Rat   322 NSLKQQ---KVFILDLFKTRNIATITVMSVMLWMLTSVGYFALSLNVPNLHGDVYLNCFLSGLIE 383

  Fly   385 IPAGIVPMLLLDRIGRKPMMSAVMLLCAASSLFVGILKGHWNASTAAIA--ARFFATMAYNVGQQ 447
            :||.....|||..:.|:.:::.|:.......|.|.::...:|..:..:.  .:|..|.|:::...
  Rat   384 VPAYFTAWLLLRTLPRRYIIAGVLFWGGGVLLLVQVVPEDYNFVSIGLVMLGKFGVTSAFSMLYV 448

  Fly   448 WASEILPTVLRGQGLAIINIMGQMGALLSPLVLSTHRYYRPLPMFIITLVSVIGALIILFLPETK 512
            :.:|:.||::|...:.|.::..::|::::|..:....|.|.||..::..::|:..:|.||.||:.
  Rat   449 FTAELYPTLVRNMAVGITSMASRVGSIIAPYFVYLGAYNRLLPYILMGSLTVLIGIITLFFPESF 513

  Fly   513 GATMPQTLDEAEKRWTLRC-------RDRKIN 537
            |.|:|:.|::.:|....||       .||:.|
  Rat   514 GVTLPENLEQMQKVRGFRCGKKSTVSMDREEN 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5592NP_647996.1 2A0119 17..519 CDD:273328 143/517 (28%)
MFS 141..509 CDD:119392 96/369 (26%)
Slc22a4NP_071606.1 2A0119 12..519 CDD:273328 142/516 (28%)
MFS 123..510 CDD:119392 105/391 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG57756
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000012
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24064
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X24
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.020

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