DRSC/TRiP Functional Genomics Resources

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Protein Alignment DNApol-epsilon58 and pole2

DIOPT Version :9

Sequence 1:NP_647995.1 Gene:DNApol-epsilon58 / 38661 FlyBaseID:FBgn0035644 Length:525 Species:Drosophila melanogaster
Sequence 2:NP_775353.1 Gene:pole2 / 192320 ZFINID:ZDB-GENE-020419-16 Length:527 Species:Danio rerio


Alignment Length:526 Identity:204/526 - (38%)
Similarity:311/526 - (59%) Gaps:10/526 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 VDLLPLRKRITNTFKLCGFLIRSENSSYLAEQLLPFDAAERDKWLTVITENLQSQKLLTPHVERA 67
            :|...:::::...||:.|.::|.|:|.:|.:.|.....||.::.|..:.::::.|.|.:..|:..
Zfish     1 MDARRVKQKVNAGFKMRGLILRPESSRFLLQVLESVSPAELEEVLERVLDSVEKQPLSSSMVDLC 65

  Fly    68 ALEKAINELNRVGLDEGETVFALIDAFTVPRFRYNQRIKKF---ELDTQP-RQLLTAPRMKSDYM 128
            .||.|:.:.::...:..:.||.:|.||.||||.::...|||   .:...| .:|....|.|::..
Zfish    66 VLEAAVQDCSQSCDETIDHVFNIIGAFDVPRFIFSTERKKFVPISMTNHPLPKLCGQARDKAELF 130

  Fly   129 QQRYAMLLQKTLRHDLFAPAVIQDGVGAEAQAKKFKLQFAENLLATSA-MKEAVVLGLLTQLKEG 192
            ::||.:|.|:|.||:||.|.||  |...:....||:|:..|.||.:|| :.|.:|||::|||:||
Zfish   131 RERYTILQQRTHRHELFTPPVI--GSAQDEGRNKFQLKTVEALLCSSARLGEVIVLGMITQLREG 193

  Fly   193 KFYVEDPTGCVQLDLTGARFHAGFFCEGCFVLAEGNYNNGVLKVDGLGFPPAEPANSSRAFFGTA 257
            |||:|||:|.||||::.|:||:|.:.|.|||||||.|.:.|..|...||||.||::.:||:||..
Zfish   194 KFYLEDPSGTVQLDISKAQFHSGLYTESCFVLAEGWYEDSVFHVSAFGFPPTEPSSFTRAYFGNV 258

  Fly   258 NTWGGESAKLLKYSAGLQELERTNTETTIVFLSDVRLDLPVVMEKLRQLFVGYDSCPPQAIVLMG 322
            |.:||.|:..:|.||.|::||..|.:...|.:|||.||...|:||:..:|.||.:.||...:..|
Zfish   259 NFFGGPSSTAVKASAKLKQLEEENEDAMFVLVSDVWLDSVEVLEKIHTMFSGYSALPPTCFIFCG 323

  Fly   323 PFTASTRNHHELRHHLDALGGLA-AGCE--QLKKQTDLILVPSSEDPTAPNILPRAPIPECLAAG 384
            .|:::.....:||...|:...|| ..||  .:...:..:.||..|||....:|||.|:.|.:...
Zfish   324 SFSSAPYGRTQLRSLRDSFKALADLICEFPSIHSSSRFVFVPGPEDPGPGAVLPRPPLAEHITEE 388

  Fly   385 LLKAWPRTQLATNPCRLQYCTQQIVVCRLDLMAKFCRNTLHFPEDTSQIEQHFARTIVCQGHLVP 449
            ..:..|.:...|||||:|||:|::|:.|.||:.|.|||....|..:..|..||.:|::.||||.|
Zfish   389 FQQRVPLSVFTTNPCRIQYCSQELVIIREDLVNKMCRNCERLPSSSLDIPTHFVKTVLSQGHLTP 453

  Fly   450 IHPIAMPVHWDYDPALWLYPLPDLIVMGDSCQSFSSSQHGCTVLNTGSFVKSKFAFKVYIPATRT 514
            :.....||.|.||..|.|||:||:||..|....|:.....|..:|.|||.:|.|:||||.|::||
Zfish   454 LPLYVCPVFWAYDHTLRLYPVPDVIVFADKYDPFNICNTDCLCINPGSFPRSGFSFKVYYPSSRT 518

  Fly   515 IEDSEI 520
            :|||::
Zfish   519 VEDSKL 524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DNApol-epsilon58NP_647995.1 Dpoe2NT 7..76 CDD:371965 17/68 (25%)
DNA_pol_E_B 287..484 CDD:367778 75/199 (38%)
pole2NP_775353.1 Gasdermin <2..161 CDD:282457 47/160 (29%)
Dpoe2NT 3..73 CDD:289021 17/69 (25%)
DNA_pol_E_B 288..487 CDD:281968 75/198 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 139 1.000 Domainoid score I4761
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2015
Inparanoid 1 1.050 269 1.000 Inparanoid score I2995
OMA 1 1.010 - - QHG54736
OrthoDB 1 1.010 - - D249486at33208
OrthoFinder 1 1.000 - - FOG0004867
OrthoInspector 1 1.000 - - oto39355
orthoMCL 1 0.900 - - OOG6_102104
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X4545
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1211.880

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