DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5568 and Acsm3

DIOPT Version :9

Sequence 1:NP_647992.1 Gene:CG5568 / 38658 FlyBaseID:FBgn0035641 Length:545 Species:Drosophila melanogaster
Sequence 2:XP_006230168.1 Gene:Acsm3 / 24763 RGDID:62086 Length:581 Species:Rattus norvegicus


Alignment Length:544 Identity:126/544 - (23%)
Similarity:216/544 - (39%) Gaps:101/544 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 NTELT----------W-----KDIQTNAMKVASYMRKL--------GLEQGDFVGVIGRLTTHLT 103
            |||.|          |     |:::.:..::.|..||.        .|::||.|.||........
  Rat    64 NTEKTGKRLSNPAFWWVDGNGKEVRWSFEELGSLSRKFANILTEACSLQRGDRVMVILPKIPEWW 128

  Fly   104 ALAYACFFNGTPYHALHTEYEQSAIERLFGITKPRLIFCD---GDEFEKVQAATKGLQVQIVTMR 165
            ....||...||......|:..|..|......:|.:.|..|   ....:.|.|..:.|..:::..:
  Rat   129 LANVACLRTGTVLIPGTTQLTQKDILYRLQSSKSKCIITDDTLAPAVDIVAAKCENLHSKLIVSQ 193

  Fly   166 NHPAGILRIQDILT------TPVEMNFRPVRLKDGTDQLLAILSSSGTSGLPKAVTISNSHQIIG 224
            :...|...:::::.      |.|:...         ::|:||..:|||:|.||  .|.::|...|
  Rat   194 HSREGWGNLKEMMKYASDSHTCVDTKH---------NELMAIYFTSGTTGPPK--MIGHTHSSFG 247

  Fly   225 SFLPVD--------SSIIQYNPNTLDWASGITMTI------NAAVFS--LTSIIEDCDFDPANLC 273
            ..|.|:        :|.:.:|.:...||.....::      .|.||:  |..      ||..::.
  Rat   248 LGLSVNGRFWLDLIASDVMWNTSDTGWAKSAWSSVFSPWTQGACVFAHYLPR------FDSTSIL 306

  Fly   274 GLIEKYRISMVFVSSSQLAMLSNCPEFYAADLSSVKYFFYGGSNCSLEVQNKIRSRLSNECV-NF 337
            ..:.|:.|::...:.:...||.......:...:|:|:....|...:.||..:.:.:...:.. .:
  Rat   307 QTLSKFPITVFCSAPTAYRMLIQNDITRSYKFNSLKHCVSAGEPINPEVMEQWKKKTGLDIYEGY 371

  Fly   338 SYTLTELNSPGCLNF-NFDEKPNSVGRPVRGIQIKIVNELGEAQGPNVVGEICFNNGQKWPG--- 398
            ..|.|.|.   |.|| ....||.|:|:|.....::|::|.|....|...|:|..   |..|.   
  Rat   372 GQTETVLI---CGNFKGMKIKPGSMGKPSPAFNVEILDENGTILPPGQEGDIAV---QVLPDRPF 430

  Fly   399 -----YYKNPEETKKMQDSENWFHTGDLGYMDEDGYLFIIDRLKDMLKYQTIMYYPSEIESVIAE 458
                 |..||.:|...... |::.|||.||||||||.:.:.|..|::........|.|:||.:.|
  Rat   431 GLFTHYVDNPSKTASTLRG-NFYITGDRGYMDEDGYFWFVARSDDVILSSGYRIGPFEVESALIE 494

  Fly   459 MPNVVEACVFGIWDPVYGDKAAASVVKKQGTQLEAQ-----DVVEYVRK-----RIPAKFKQLNG 513
            .|::.|:.|....||:.|:...|.:|.....:|..|     ::.|:|:|     :.|.|.:    
  Rat   495 HPSIAESAVVSSPDPIRGEVVKAFIVLNPDYKLHDQEQLKKEIQEHVKKTTAPYKYPRKIE---- 555

  Fly   514 GALIVDHIIQ--SGNRKANRAATK 535
               .::.:.:  ||..|.|....|
  Rat   556 ---FIEELPKTVSGKVKRNELRRK 576

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5568NP_647992.1 CaiC 35..540 CDD:223395 126/544 (23%)
Firefly_Luc_like 55..530 CDD:213279 124/537 (23%)
Acsm3XP_006230168.1 Acs 45..575 CDD:223442 125/541 (23%)
AFD_class_I 48..578 CDD:302604 126/544 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D683933at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.