DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vn and Sned1

DIOPT Version :9

Sequence 1:NP_523942.2 Gene:vn / 38657 FlyBaseID:FBgn0003984 Length:623 Species:Drosophila melanogaster
Sequence 2:NP_766051.4 Gene:Sned1 / 208777 MGIID:3045960 Length:1403 Species:Mus musculus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vnNP_523942.2 IGc2 471..538 CDD:197706
EGF 566..598 CDD:278437
Sned1NP_766051.4 NIDO 104..260 CDD:214712
EGF_CA 272..308 CDD:238011
EGF_CA 311..347 CDD:238011
EGF_CA 387..423 CDD:238011
EGF_CA 433..464 CDD:238011
EGF_CA 545..577 CDD:238011
EGF_CA 585..616 CDD:238011
EGF_CA 621..655 CDD:238011
EGF_CA <664..693 CDD:238011
CCP 698..752 CDD:153056
EGF_CA 754..789 CDD:238011
EGF_CA 793..827 CDD:238011
EGF_CA 830..865 CDD:238011
fn3 908..988 CDD:278470
FN3 1005..1084 CDD:214495
fn3 1106..1184 CDD:278470
EGF_CA 1311..1342 CDD:238011
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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