DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scny and UBP20

DIOPT Version :9

Sequence 1:NP_729092.1 Gene:scny / 38648 FlyBaseID:FBgn0260936 Length:1038 Species:Drosophila melanogaster
Sequence 2:NP_567544.1 Gene:UBP20 / 827513 AraportID:AT4G17895 Length:695 Species:Arabidopsis thaliana


Alignment Length:663 Identity:159/663 - (23%)
Similarity:259/663 - (39%) Gaps:147/663 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 KPGNPGAINGFSGKNNTGKLVGANGHDNNGARKQAEHPNNQSHHINHHNHQHPTSNPNELPKPKR 149
            :|..|....||          |::..|:|      :..|::                ||      
plant   129 RPWTPNVSPGF----------GSDDDDDN------DDDNSK----------------NE------ 155

  Fly   150 VLYPRENIRIGWKQS-ERKWQVGTGMINVGNTCYLNSTLQALLHIPALANWLVSEQAHLADCNVA 213
               ||:::..|::|. |....||.|:.|:||:|:|||..|...|...|...|:|.: :...|:..
plant   156 ---PRKSLFYGFRQEPEPVTGVGAGLWNLGNSCFLNSVFQCFTHTVPLIESLLSFR-YEVPCHCG 216

  Fly   214 EPGSGCIICAMTKTL-LATQSNQSAVRPFLIYSKLKQICKHMVVGRQEDAHEFLRFLVEAMERAY 277
            .. ..|:|.|:...: .|.:..:..:.|:..:..|..........:||||||||:..:|.:|...
plant   217 NE-FFCVIRAIRYHIEAALRPERCPIAPYFFFDNLNYFSPDFQRYQQEDAHEFLQAFLEKLEICG 280

  Fly   278 LMR--FRNYKELDQLVKETTPLGQIFGGYLRSEVRCLSCNHVSITFQHFQDLLLDIRKADSLEDA 340
            ..|  ||.     .:..:     .:|.|.|.|.:||.:|::||.|::....|.|:|...|:|..|
plant   281 SDRTSFRG-----DITSQ-----DVFSGRLISGLRCCNCDYVSETYEKSVGLSLEIEDVDTLGSA 335

  Fly   341 FEGHFSRERLEDMGYKCEGCKKKVSATKQFSLERAPITLCIQLKRFSMIG---NKLTKQISFKSR 402
            .|.....|:|::. ..|:.|.:|||..||..|::.|:.....||||...|   .|:.|.:.....
plant   336 LESFTRVEKLDEQ-LTCDNCNEKVSKEKQLLLDKLPLVATFHLKRFKNNGLYMEKIYKHVKIPLE 399

  Fly   403 IDLSKYAARSQAAQAQPLTYRLVSMVTHLGASQHCGHYTAIGSTDTGSFYNFDDSYVRPIAMHSV 467
            |||..|....|..:.. ..|.|.::|.|.|.|...|||::...:....:::||||.|..|....|
plant   400 IDLQPYMRNIQENEVS-TKYHLYALVEHFGYSVAYGHYSSYVRSAPKIWHHFDDSKVTRIDEDMV 463

  Fly   468 CNTNAYIMFFELDLSQAASPAANRPNGVRLTNG--HSTTPVPAATVSSPSPTRFIGPQLPAGGAN 530
            .:.::||:|:..:             |.|..:.  ....|:..|::.:.||...:         :
plant   464 LSQDSYILFYARE-------------GTRWFSSVYEEMQPLVEASLLNSSPKSVL---------D 506

  Fly   531 GYTNGNAQKTAIQFKQQNQQSPQNGLQLGTGKFQDTAKPPLVGA-----HAKGEATSAPTANGNK 590
            ..|||..         .::.|.:||         |.|..|...|     |.|.:......:|.:.
plant   507 SSTNGEC---------LSEISYENG---------DKASKPCDSAGVCNQHVKTKEDFVSLSNDDV 553

  Fly   591 SSSPSSNSSSNHKSINQQQYLPISSDD-------EDIEDEMKPRPTTAQLPSMPNMTENHTEPKA 648
            ..  |:.|||..:|...:...|:..||       ::.:..:.....|.:....|.:.:.:.|...
plant   554 FL--SAESSSGEESPMGELLDPLDPDDSYSPCTEKESDSCLAIERATIRDDFFPLLLDQNQESST 616

  Fly   649 KSPVKIQVKT----------------PVKTPLKSLVPYESASEEEEA-----PLPNPRKRPSGED 692
            .|| |:|.:|                |.|.||.|:.....:.|.|..     ..|:||.|     
plant   617 SSP-KLQERTFEMQLLQMEETTKSQEPWKQPLSSISNIADSMEAEFVYGDLMKKPSPRAR----- 675

  Fly   693 SSESDQESGQTNG 705
              |...::..|||
plant   676 --ELLDQAISTNG 686

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scnyNP_729092.1 Peptidase_C19E 171..477 CDD:239126 92/311 (30%)
UCH 172..477 CDD:278850 91/310 (29%)
Asp-B-Hydro_N <617..>731 CDD:191249 24/117 (21%)
UBP20NP_567544.1 Peptidase_C19E 175..474 CDD:239126 93/312 (30%)
UCH 176..473 CDD:278850 91/310 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1865
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000177
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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