DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scny and Usp17le

DIOPT Version :9

Sequence 1:NP_729092.1 Gene:scny / 38648 FlyBaseID:FBgn0260936 Length:1038 Species:Drosophila melanogaster
Sequence 2:NP_001243902.1 Gene:Usp17le / 625530 MGIID:107697 Length:540 Species:Mus musculus


Alignment Length:344 Identity:122/344 - (35%)
Similarity:185/344 - (53%) Gaps:31/344 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 IGWKQSERKWQVGTGMINVGNTCYLNSTLQALLHIPALANWLVSEQAHLADCNVAEPGSGCIICA 223
            :.|:..:..   |.|:.|.||:||||:.||.|.|.|.||::::| |.|...|...|   ||.:||
Mouse    75 LSWESPQGP---GCGLQNTGNSCYLNAALQCLTHTPPLADYMLS-QEHSQTCCSPE---GCKMCA 132

  Fly   224 M----TKTLLATQSNQSAVRPFLIYSKLKQICKHMVVGRQEDAHEFLRFLVEAMERAYLMRFRNY 284
            |    |::||.:.|. ..::|..|.:  ....||    :||||||||.|.:|.|..:.|   :.:
Mouse   133 MEAHVTQSLLHSHSG-DVMKPSQILT--SAFHKH----QQEDAHEFLMFTLETMHESCL---QVH 187

  Fly   285 KELDQLVKETTPLGQIFGGYLRSEVRCLSCNHVSITFQHFQDLLLDIRKADSLEDA-FEGHFSRE 348
            ::.|...::|:|:..||||:.||:::||.|...|.||..|.|:.|||..|.|:..| ::...|.|
Mouse   188 RQSDPTPQDTSPIHDIFGGWWRSQIKCLHCQGTSHTFDPFLDVPLDISSAQSVNQALWDTGKSEE 252

  Fly   349 RLEDMGYKCEGCKKKVSATKQFSLERAPITLCIQLKRFS-MIGNKLTKQISFKSRIDLSKYAARS 412
            .|.:..|.|..|::|:.|:|...:..||..|.:.||||| ..||||.:::|:...:||..|.:..
Mouse   253 LLGENAYYCGRCRQKMPASKTLHVHIAPKVLLLVLKRFSAFTGNKLDRKVSYPEFLDLKPYLSEP 317

  Fly   413 QAAQAQPLTYRLVSMVTHLGASQHCGHYTAIGSTDTGSFYNFDDSYVRPIAMHSVCNTNAYIMFF 477
            ...   ||.|.|.:::.|.||:.:.|||........|.:|..||:.|....:.||.|.|||::|:
Mouse   318 TGG---PLPYALYAVLVHDGATSNSGHYFCCVKAGHGKWYKMDDTKVTRCDVTSVLNENAYVLFY 379

  Fly   478 --ELDLSQAASPAANRPNG 494
              :.||.|.   :.:.|.|
Mouse   380 VQQTDLKQV---SIDMPEG 395

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scnyNP_729092.1 Peptidase_C19E 171..477 CDD:239126 115/311 (37%)
UCH 172..477 CDD:278850 114/310 (37%)
Asp-B-Hydro_N <617..>731 CDD:191249
Usp17leNP_001243902.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..22
Peptidase_C19E 84..380 CDD:239126 116/312 (37%)
UCH 85..379 CDD:278850 114/310 (37%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 431..461
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 499..540
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 209 1.000 Domainoid score I2834
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000177
OrthoInspector 1 1.000 - - otm44363
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24006
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.010

Return to query results.
Submit another query.