DRSC/TRiP Functional Genomics Resources

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Protein Alignment scny and Usp1

DIOPT Version :9

Sequence 1:NP_729092.1 Gene:scny / 38648 FlyBaseID:FBgn0260936 Length:1038 Species:Drosophila melanogaster
Sequence 2:NP_001263061.1 Gene:Usp1 / 43462 FlyBaseID:FBgn0028476 Length:1078 Species:Drosophila melanogaster


Alignment Length:766 Identity:153/766 - (19%)
Similarity:259/766 - (33%) Gaps:185/766 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 LRESLGGNSSAGSSTDQAKSG------EDTNGSLQNHIVANAKRILMAKIEYEEVPNYHESVLEN 76
            |..:|.||..| .||:...:.      :|.|.:.:.:...:|...||..:..  :...::|:::.
  Fly   426 LYNNLHGNEMA-DSTEPYHADTLLHAIQDVNATFEGNQQQDAHEFLMCVLNC--IRETNQSLIKA 487

  Fly    77 LKSKYIVIKPG---NPGAINGFSGKNNTGKLVGANGHDNNGARKQAEHPNNQSHHINHHNHQHPT 138
            :.....||..|   ||..::...|::.|......|.:..||:...::....:            |
  Fly   488 IGECPEVIANGYIANPDEVDTGEGQDRTDSTASQNLNAGNGSLATSQTTTTK------------T 540

  Fly   139 SNPNELPKPKRVLYPRENIRIGWKQSERKWQVGTGMINVGNTCYLNSTLQALLHIPALANWLVSE 203
            |..:...|.|..:.|.::.|:.....|.....| |:...|..   ::|..:|.::          
  Fly   541 SFFSRKSKRKDEVKPSKSTRVQSPLKENSPTAG-GITGAGTA---HATANSLFYL---------- 591

  Fly   204 QAHLADCNVAEPGSGCIICAMTKTLLATQSNQSAVRPFLIYSKLKQICKHMVVGRQEDAHEFLRF 268
              :..|.:.|...||.          |:.|....|..........|..|:    ..:|.......
  Fly   592 --NTVDLSGASSTSGS----------ASTSASGVVSTSAALPTPPQATKY----SSDDEMNSATV 640

  Fly   269 LVEAMERAYLMRFRNYKELDQLVKETTP--LGQIFGGYLRSEVRCLSCNHVSITFQHFQDLLLDI 331
            |.:.|            .|::.::|...  ....|.|.:....:||||..::...|...|:.:.:
  Fly   641 LKDKM------------RLEERIRELNLNFFSSDFEGIVVLTTKCLSCETITRQKQGMLDISVPV 693

  Fly   332 -----RKADSLEDA--------------FEGHFSRERLEDMGYKCEGCKKKVSATKQFSLERAPI 377
                 ..|| |:|.              |.|        :..|.|..|.....|.:..|.|..|.
  Fly   694 PISGYDNAD-LQDKPSTYIQNSCITKEYFRG--------ENKYSCNQCTGYTEAIRSISYEVLPR 749

  Fly   378 TLCIQLKRFSMIGNKLTKQISFKSRIDLSKYAAR-SQAAQAQPL-TYRLVSMVTHLGASQHCGHY 440
            .|.|||.|||....|::..:  .:...|..:.|. .:..:...| .|:|.|::||:||:...|||
  Fly   750 LLVIQLNRFSGGMEKVSTYV--PTTFTLPCFCATCCELGEGNKLHVYKLYSVITHVGATLTVGHY 812

  Fly   441 TAIGSTDTGSFYNFDDSYVRPIAMHSVCNTNAYIMFFELDLSQAASPAAN-RPNGVRLTNGHS-- 502
            .|.     ..|.:....||..........||:..|     .|||.....| .||     ||.|  
  Fly   813 IAY-----TCFLDLASDYVNCPKDRRNTMTNSQTM-----ASQAVPSNENAAPN-----NGSSSV 862

  Fly   503 -TTPVPAATVSSPSPTRFIGPQLPAGGANGYTNGNAQKTAIQFKQQNQQSPQNGLQLGTGKFQDT 566
             :|||.||..:..|....:..::..|.:...::|:..|..   ||.|....:| :..|.||...:
  Fly   863 ASTPVIAAASALASSGNILMKKMKFGRSKASSSGDMSKNV---KQVNGIISKN-ITNGIGKLSIS 923

  Fly   567 AKPPLVGAHAKGEATSAPTANGNKSS-------SPSSNSSSN----------------------- 601
            .....|...|.....:..|::.|.:|       |..:.|:||                       
  Fly   924 TTCQGVNCCAMRLCCTQQTSSSNSTSCSDFSEESLQNGSNSNLSFGGSGSTYPTGYGSTGRGGVR 988

  Fly   602 ----HKSINQQQYLPISSDDEDIEDEMKPRPTTAQLPSMPNMTENHTEPKAKSPVKIQVKTPVKT 662
                |...:...|:   .||:.|:                .||:...| :..||.:....||.  
  Fly   989 ANYAHGGPDPIWYM---CDDDKIK----------------AMTQREFE-ELLSPTRKITITPY-- 1031

  Fly   663 PLKSLVPYESASEEEEAPLPNPRKRPSGEDSSESDQESGQTNGHSKTNGSH 713
             |.....::...::...|:|.....|....|::|     ..:..:.::|||
  Fly  1032 -LLFYARFDLQPQKATPPMPGSSTTPPPPSSAQS-----SWSNENVSSGSH 1076

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scnyNP_729092.1 Peptidase_C19E 171..477 CDD:239126 68/328 (21%)
UCH 172..477 CDD:278850 67/327 (20%)
Asp-B-Hydro_N <617..>731 CDD:191249 18/97 (19%)
Usp1NP_001263061.1 Peptidase_C19 308..819 CDD:271592 92/465 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45456833
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24006
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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