DRSC/TRiP Functional Genomics Resources

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Protein Alignment scny and puf

DIOPT Version :9

Sequence 1:NP_729092.1 Gene:scny / 38648 FlyBaseID:FBgn0260936 Length:1038 Species:Drosophila melanogaster
Sequence 2:NP_001262923.1 Gene:puf / 42935 FlyBaseID:FBgn0039214 Length:3930 Species:Drosophila melanogaster


Alignment Length:709 Identity:143/709 - (20%)
Similarity:231/709 - (32%) Gaps:277/709 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   147 PKRVLYPRENIRIGWKQSERKWQVG-TGMINVGNTCYLNSTLQALLHIPALANWLVSEQAHLADC 210
            ||:. ||.:.    |.:.|.:.:.| .|:.|:|.|||:.|.:|.|..:|         ||..|..
  Fly  1994 PKQP-YPWDY----WPRDEGRAECGYVGLTNLGATCYMASCVQHLYMMP---------QARAAVL 2044

  Fly   211 NVAEPGSGCIICAMTK---TLLATQ--------SNQSAVRPFLIYSKLKQICK-----H--MVVG 257
            .|  |.:     |..|   |||..|        |.:.:..|       :..|:     |  :..|
  Fly  2045 RV--PPN-----AARKHGPTLLELQRMFAYLLESERKSYNP-------RSFCRVYQMDHQPLNTG 2095

  Fly   258 RQEDAHEFLRFLVEAMERAYLMRFRNYKELDQLVKETTPLGQIFGGYLRSEVRCLSCNHVSITFQ 322
            .|:|..||...||..:|..       ..:|..|||      ::|.|.|.:.|..|.|.|||.|.:
  Fly  2096 EQKDMAEFFIDLVSKLEDM-------TPDLKHLVK------RLFCGSLSNNVVSLDCGHVSRTAE 2147

  Fly   323 HFQDLLLDIRKADSLEDAFEGHFSRERLE-DMGYKCEGCKKKVSATKQFSLERAPITLCIQLKRF 386
            .|..:...:....:|:::.:....::.|| |..|.|..|.|||.|.|:...::.|..||....|:
  Fly  2148 DFYTVRCQVADMRNLQESLDEVTVKDTLEGDNMYTCSQCGKKVRAEKRACFKKLPQILCFNTMRY 2212

  Fly   387 -----SMIGNKLTKQISFKSRIDLSKYAAR-----------------------------SQAAQA 417
                 :|:..|:....||..|:::..|..:                             ::.|:|
  Fly  2213 TFNMVTMLKEKVNTHFSFPLRLNMCHYVEKTLMPQQYKEERERRQKEKEGADGSGDGNDNEKAEA 2277

  Fly   418 -------QPLTYRLVSMVTHLGASQHCGHYTAIGSTDTGSFYN-------FDDSYVRPIAMHSVC 468
                   :...|.||.:..|.|.:.. |||.:.....|.:.|:       |:|:.|:|.....:.
  Fly  2278 TLDDDIEECYEYELVGVTVHTGTADG-GHYYSFIKERTKTSYHTHERWFLFNDAEVKPFDPSQIA 2341

  Fly   469 --------------------------NTN-AYIMFFELDLSQAASPAANRPNGVRLTNGHS---T 503
                                      .|| ||::|:|..|.:            .|...||   .
  Fly  2342 AECFGGEMTSKTYDSVTEKYLDFSFEKTNSAYMLFYERRLPE------------HLQRRHSELLV 2394

  Fly   504 TPVPAATVSSPSPTRFIGPQLPAGGANGYTNGNAQKTAIQFKQQNQQSPQNGLQLGTGKFQDTAK 568
            ||.|:.||..                                                       
  Fly  2395 TPTPSPTVEE------------------------------------------------------- 2404

  Fly   569 PPLVGAHAKGEATSAPTANGNKSSSPSSNSSSNHKSINQQQYLPISSD-DEDIEDEMKPRPTTAQ 632
                    |.|| ..||.....||.                   |.:| |.::|.|.|.:...||
  Fly  2405 --------KSEA-EEPTKMETSSSE-------------------IKADVDVEVEVEEKDKEKPAQ 2441

  Fly   633 LPSMPNMTENHTEPKAKSPVKIQVKTPVKTPLKSLVPYESASEEEEAPLPNPRKRPSGEDSSESD 697
                       |:.::|           :||.|..:..:.:.::|.......::...||:.||:|
  Fly  2442 -----------TDTESK-----------ETPAKEEIADDKSKQDEPEEKKIEKQSREGEEKSETD 2484

  Fly   698 ---------------QESGQTNGHSKTNGSHTNGSASSSVHVNNSKQKTDAIDEIFKSL 741
                           |.:...:.|.:.|.|::..|.......:.:.||.    ::|:.|
  Fly  2485 EKPTEMTTVSTEEEKQPTANCDNHQQNNNSNSKASNDQQPSTSKAAQKL----QLFRPL 2539

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scnyNP_729092.1 Peptidase_C19E 171..477 CDD:239126 91/400 (23%)
UCH 172..477 CDD:278850 90/398 (23%)
Asp-B-Hydro_N <617..>731 CDD:191249 23/128 (18%)
pufNP_001262923.1 peptidase_C19C 2013..2382 CDD:239124 93/405 (23%)
UCH 2014..2377 CDD:278850 90/399 (23%)
DUF3517 2723..>2877 CDD:288853
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24006
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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