DRSC/TRiP Functional Genomics Resources

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Protein Alignment scny and usp5

DIOPT Version :10

Sequence 1:NP_729092.1 Gene:scny / 38648 FlyBaseID:FBgn0260936 Length:1038 Species:Drosophila melanogaster
Sequence 2:XP_005173534.1 Gene:usp5 / 406618 ZFINID:ZDB-GENE-040426-2584 Length:853 Species:Danio rerio


Alignment Length:485 Identity:101/485 - (20%)
Similarity:162/485 - (33%) Gaps:135/485 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   128 HINHHNHQHPTSNPNELPKPKRVLYPRE---NIRIG-WKQSERK-------WQVG-TGMINVGNT 180
            |::|......|     :.|.:|.:...|   |.|:| |:..:..       |..| |||.|:||:
Zfish   273 HLSHFGIDMMT-----MEKTERTMTELEIAVNQRVGEWEVIQESGTTLRPLWGPGLTGMKNLGNS 332

  Fly   181 CYLNSTLQALLHIPALANWLVSEQAHLAD-----------CNVAEPGSGCIICAMTK-------- 226
            |||||.:|.|..||......||....:.|           ..||:.|.|.:....:|        
Zfish   333 CYLNSVMQVLFTIPDFQTKYVSNIDKIFDEAPSDPTQDFKTQVAKLGYGLLSGEYSKPAPDPADE 397

  Fly   227 --TLLATQSNQSAVRPFLIYSKLKQICKHMVVGRQEDAHEFLRFLVEAMERAYLMRFRNYKELDQ 289
              |....:.:|..:.|.:..:.:.:........||:||.|||...:..:||.........:....
Zfish   398 PNTSAEPRGDQVGIAPRMFKALVGRGHPEFSTNRQQDAQEFLLHFINMVERNCRSGMNPSEAFRF 462

  Fly   290 LVKETTPLGQIFGGYLRSEVRCLSCNHVSIT--FQHFQDLLLDIRKADSLEDAFEGHFSRERLED 352
            ||:|              ::.|........|  ..:...|.:.:.:|.::::..|....||..|.
Zfish   463 LVEE--------------KIVCQQSQKAKYTQRVDYIVQLPVPMDQATNMDELQEAERRREEAES 513

  Fly   353 MG----------------------------YKCEGCKKKVSATKQFSLERAPITLCIQLKRFSM- 388
            .|                            :.....:.|.:|||.......|..|.||:|:|:. 
Zfish   514 SGAPPPVAPRAQIPFAACLAALSEPETLTDFWSSAVQAKTTATKTTRFASFPDHLVIQIKKFTFG 578

  Fly   389 ---IGNKLTKQISFKSRIDLSKYAARSQAAQAQ--------PLTYRLVSMVTHLGASQHCGHYTA 442
               :..||...|.....:||:...|..|....:        ||....|.:...||:.        
Zfish   579 LDWVPKKLDVSIDVPETLDLNALRAMGQQPGEELLPEVAPPPLMTPDVEVKGILGSH-------- 635

  Fly   443 IGSTDTGSFYN------FDDSYVRPI------------AMHSVCNTNA-----YIMFFELDLSQA 484
             |:.:..|.|:      .|||.|..:            |::...||..     ::| ..:|....
Zfish   636 -GNEEDDSLYSPLLSPVLDDSTVSQLCEMGFPLEACRKAVYYTGNTGIDAAMNWVM-GHMDDPDF 698

  Fly   485 ASPAANRPNGVRLTNGHSTTPVPAATVSSP 514
            |:|.        :..|.|:.|....|.|.|
Zfish   699 AAPL--------VLPGSSSAPGTTPTESLP 720

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scnyNP_729092.1 Peptidase_C19E 171..477 CDD:239126 81/392 (21%)
usp5XP_005173534.1 zf-UBP_var 15..77 CDD:407678
zf-UBP 197..270 CDD:460464
Peptidase_C19B 325..849 CDD:239123 88/428 (21%)
UBA1_UBP5_like 654..697 CDD:270480 8/43 (19%)
UBA2_UBP5 720..761 CDD:270569 1/1 (100%)
Blue background indicates that the domain is not in the aligned region.

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